30 results

Implement genomic selection within the National Pacific Oyster breeding program

Project number: 2023-113
Project Status:
Current
Budget expenditure: $933,028.00
Principal Investigator: Andrew Trotter
Organisation: Institute for Marine and Antarctic Studies (IMAS) Hobart
Project start/end date: 23 May 2024 - 29 Sep 2027
Contact:
FRDC

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence
Industry

The feasibility of a financial safety-net: Investigating financial mechanisms to protect oyster growers from disease outbreaks

Project number: 2023-070
Project Status:
Completed
Budget expenditure: $100,000.00
Principal Investigator: Andy Myers
Organisation: NSW Farmers' Association
Project start/end date: 1 Feb 2024 - 5 Dec 2024
Contact:
FRDC

Need

The oyster industry have long recognised their exposure to the unpredictable nature of the environment. Considerable time, effort and resources have been invested in risk mitigation activities. Examples such as Selective Breeding Programs, Quality Assurance Programs, Environmental Management Systems and innovations in growing techniques and animal husbandry are all designed to improve the attritubes of stock and to mitigate the likelihood & severity of a disturbance. It has been identified however, that there has been minimal investment in last resort options that support growers through worst-case scenarios.

While state & federal disaster arrangements are well established to support primary producers following declared natural disasters, the same mechanisms do not exist for disease outbreaks. Attempts to establish an aquatic deed (officially known as the aquatic EADRA - Emergency Aquatic Disease Response Arangement) have so far failed, and traditional stock insurance (such as that available to cattle producers, or ranched tuna) is not readily available to oyster farmers.

This situation has escalted following the Qx outbreak in Port Stephens, NSW. Despite suffering catastophic losses, oyster farmers in this estuary have received little support, beyond fee waivers and assistance associated with flooding events in the region. In 2019, the estuary hosted ~45 oyster farming businesses with an annual GVP of well-over $10m. Almost all of these businesses are now operating part-time, and even the most productive and profitable of growers have needed to find off-farm work to supplement their income. With considerable infrastructure in the water, farmers are unable to walk away from leases, as tipping fees alone are estimated to exceed $5m.

Understandably growers around the state have been rocked by the outbreak, the associated response and lack of financial support, and as a result have been reassessing their own exposure to risk. One thing that has also become clear, is that industry needs to take charge of their own future and look at measures to support their recovery, reestablishment or dignified exit following disease incursions.

This application seeks funding support for NSW Farmers to drive this process. This will involve the development and administration of a tender and contracting process to deliver an options document exploring the advantages and drawbacks of various financial support mechanisms current available and their appropraiteness for implementation in the oyster industry. This will include the investigation of solutions that are estbalished in other states, and other agricultural sectors. It is anticipated that recommedations put forward will be broadly split into 1) mechanisms that can be implemented at the farm/enterprise level, 2) mechanisms that may be implemented at the state/sector-wide level.

The options paper will provide valuable information which may inform the actions of fishing & aquaculture sectors around the country.

Objectives

1. By October 2024, obtain insights into potential financial support mechanisms, and their suitability for implementation in the NSW oyster industry.
Industry

Understanding the risks associated with climate change on infectious diseases affecting the seafood industry

Project number: 2022-029
Project Status:
Current
Budget expenditure: $519,631.00
Principal Investigator: Joy Becker
Organisation: University of Sydney (USYD)
Project start/end date: 31 Mar 2024 - 29 Jun 2026
Contact:
FRDC

Need

Fish and aquatic species play a vital role in global food security by providing nearly 17% of animal protein eaten by people. However, freshwater and marine aquatic ecosystems that sustain aquaculture and fisheries are undergoing significant changes as a result of global warming of our atmosphere and oceans with projections suggesting that these changes will be heightened in the future (Bahri et al., 2018). It is estimated that global marine primary production (ie phytoplankton) which underpins the health and sustainability of all marine ecosystems will decline by 6 +/- 3% by 2100 (Bahri et al., 2018). This decline in primary productivity will result in key vulnerabilities in aquatic food production that contribute to global food security. Climate-driven changes in temperature, precipitation, ocean acidification, incidence and extent of hypoxia and sea level rise, amongst others, are expected to have long-term impacts in the aquaculture and fisheries sectors at multiple scales (Bahri et al., 2018, Fulton et al., 2020).

Australia’s marine environment is changing faster than at any other period in recorded history (Fulton et al., 2020). In the last 100 years, Australia's oceans have warmed by 1C and there are identified hotspots located in southeast and southwest Australia which have warmed by 2C (Hobday et al., 2018). The surface sea temperatures around Australia are expected to increase by another 1 to 2C in the north and 2 to 5C in the south over the next 100 years (Hobday et al., 2018). While the warming is predicted to continue, the specific mixes of atmospheric and ocean current patterns around Australia mean the magnitude of climate change will differ place-to-place, and different aquaculture and fisheries and sectors will face different challenges (Fulton et al., 2020).

Biological and ecological impacts of climate change on aquatic ecosystems include shifts in food resources, habitat availability and fluctuations in species distributions (Bahri et al., 2018, Fulton et al., 2020). The FAO (Bahri et al., 2018) have identified that climate change may also bring increased risks for aquatic animal health (e.g., by changing the abundance and virulence of pathogens or the susceptibility of the host to pathogens and infections) and food safety concerns (e.g., faster growth rates of pathogenic marine bacteria, or the incidence of parasites and food-borne viruses).

The project proposed will use a risk analysis framework applied at the sector-level to address the change in the risks of infectious diseases in Australian aquaculture and fisheries industries due to climate change. The project outcomes will identify and prioritize the risks from infectious diseases under the future climate scenarios. This project falls under the research priority to address sector-level mitigation strategies to support strategies for disease preparedness, biosecurity, and border protection. The project outcomes will assist industries in preparing risk mitigation strategies to build resilience and sustain productivity in Australia’s aquaculture and fishery industries.

References
Bahri, T., Barange, M., Moustahfid, H. 2018. Chapter 1: Climate change and aquatic systems. In Barange, M., Bahri, T., Beveridge, M.C.M., Cochrane, K.L., Funge-Smith, S., Poulain, F. (Eds), Impacts of climate change on fisheries and aquaculture: synthesis of current knowledge, adaptation and mitigation options. FAO Fisheries and Aquaculture Technical Paper No. 627. Rome, FAO, pp. 1-18.

Fulton EA, van Putten EI, Dutra LXC, Melbourne-Thomas J, Ogier E, Thomas L, Murphy RP, Butler I, Ghebrezgabhier D, Hobday AJ, Rayns N (2020) Adaptation of fisheries management to climate change Handbook, CSIRO, Australia.

Hobday, A.J., Pecl, G.T., Fulton, B., Pethybridge, H., Bulman, C., Villanueva, C. 2018. Chapter 16: Climate change impacts, vulnerabilities and adaptions: Australian marine fisheries. In Barange, M., Bahri, T., Beveridge, M.C.M., Cochrane, K.L., Funge-Smith, S., Poulain, F. (Eds), Impacts of climate change on fisheries and aquaculture: synthesis of current knowledge, adaptation and mitigation options. FAO Fisheries and Aquaculture Technical Paper No. 627. Rome, FAO, pp. 347-362.

Objectives

1. Confirmation and agreement of the 3 industry sectors for the risk assessment and establish the project steering committee
2. Determine the future climate scenarios for the key production areas for each industry sector.
3. Complete the systematic reviews, hazard identification and risk assessment for each industry sector under the future climate scenarios.
4. In collaboration with stakeholders from each sector, the project team will describe options for mitigation of risks identified under the climate change scenarios developed.
5. Deliver a workshop for each industry sector to inform and discuss project outcomes including potential mitigation strategies for Australian conditions.
6. Production of the non-technical project outputs (e.g. infographics and technical guide).

Environmental risk factors that may contribute to vibrio outbreaks - A South Australian case study

Project number: 2021-097
Project Status:
Completed
Budget expenditure: $59,100.00
Principal Investigator: Stephen Pahl
Organisation: Department of Primary Industries and Regions South Australia (PIRSA)
Project start/end date: 30 Jun 2022 - 30 Oct 2022
Contact:
FRDC

Need

Vibrio parahaemolyticus can live in sediments and waters year-round and generally proliferates in the water column when water temperatures are greater than 14degC. V. parahaemolyticus are rarely isolated from seawaters below 10degC, though some cold-tolerant strains have been isolated overseas. The concentration of V. parahaemolyticus in the water column increases as the water temperature increases. Oysters naturally accumulate and depurate V. parahaemolyticus through filter-feeding, but once oysters are no longer underwater depuration can no longer occur and V. parahaemolyticus levels increase quickly unless the oysters are less than 10degC. Recent outbreaks in South Australia have been very unusual in that they have occurred in winter-spring. Other environmental factors including salinity, chlorophyll and turbidity have also been linked to vibrio prevalence, but relationships are inconsistent. Internationally some growing areas have established relationships between V. parahaemolyticus and other environmental parameters such as suspended matter, chlorophyll a and dissolved organic carbon, although this varies between areas and is not consistent.

Little is known around why outbreaks have begun occurring in Australia and Vibrios are an increasing risk to commercially produced oysters in Australia. The prevalence of vibriosis is globally linked to the effects of climate change, aging populations, dietary changes and improved detection methods. It is vital that all available relevant environmental data associated with these recent outbreaks is recorded and made available for future interrogations. The identification of data gaps and tools that could be used to identify and assess potential vibrio risk factors may help guide where additional effort is required to assist future understanding of this complex and emerging food safety issue in Australia. This project is important to help defend current demand, consumer trust and safety in oysters.

Objectives

1. To collate and record all available environmental conditions (pre- and post-harvest) associated with the recent vibrio outbreaks in South Australia
2. To review the environmental conditions which may have been risk factors contributing to the recent vibrio outbreaks in South Australia
3. To review available tools that could be used to identify and assess potential vibrio risk factors and any approaches for improved surveillance
4. Recommendations on data and information collection deficiencies related to the South Australian situation

Final report

ISBN: 978-1-876007-54-6
Authors: Stephen Pahl Navreet Malhi Hugo Bastos de Oliveira Alison Turnbull
Final Report • 2024-07-01 • 12.61 MB
2021-097-DLD.pdf

Summary

Vibrios are naturally occurring bacteria that are ubiquitous in fresh, estuarine and marine environments. Many Vibrio species are non-pathogenic, but some can cause disease in animals, and others are pathogenic to humans. People can contract vibriosis by consuming raw, undercooked or cross-contaminated seafood (predominantly oysters, crabs and shrimp) or exposing a wound to seawater. Bivalve molluscs, such as oysters, are a known vector for pathogenic bacteria as they are often consumed raw, and their filter feeding action concentrates bacteria within their tissues. Historically Vibrio parahaemolyticus has been rarely implicated in illnesses attributed to the consumption of Australian seafood. However, several recent outbreaks of gastroenteritis caused by V. parahaemolyticus in oysters have occurred in Australia.
 
An improved understanding of the environmental determinants was warranted to assist in future risk management considerations and food safety requirements. This report describes the results of the study undertaken which recorded the available and relevant environmental information and considered known risk factors relevant to V. parahaemolyticus that could be used for future investigations and to help underpin risk management considerations. The identification of data gaps and tools that could be used to identify and assess potential Vibrio risk factors may help guide where additional effort is required to assist future understanding of this complex food safety issue.
 
Vibrios are part of the normal microbiota of many oysters and are ubiquitous in many other aquatic products. Vibrios multiply in oyster tissues at temperature-dependent rates before, during and after harvest. Across the two outbreaks, three sequence types (ST36, ST50 and ST417) were identified from clinical isolates and only one sequence type (ST417) was isolated from oysters as part of investigations following the second outbreak. The environmental conditions, notably sea surface temperature, oyster basket temperature and salinity, during the onset periods of the two Vibrio outbreaks (February 2021 and September 2021) were conducive to the growth of V. parahaemolyticus. However, there were no evident climatological anomalies in the collated data sets that help to substantiate why these Vibrio outbreaks occurred in South Australia at these times given that there had not been any significant changes in oyster production, harvest and post-harvest practices. 
 
This project has also highlighted several data gaps. Poor traceability through supply chain hampered traceback investigations and the identification of the unique harvest date, harvest location, and subsequent production, harvest and post-harvest conditions was limited. There is no information publicly available on the levels of detection of V. parahaemolyticus in the implicated oysters. The occurrence of these two and similar recent Vibrio outbreaks in Australia demonstrates that vibrios are a risk that requires effective control mechanisms. A range of tools and approaches are available that could be used to identify and assess potential risk factors and improved surveillance. These tools include in-situ data collection, remote sensing of the environment, microbiological sampling and molecular diagnostics. 
 
Recommendations
1. In-situ environmental monitoring is improved through use of loggers in more growing and harvest areas.
2. Further work needs to be undertaken within the supply chain to ensure that legislated responsibilities on labelling, traceability and control of co-mingling are adhered to.
3. Vibrio parahaemolyticus isolates should be collected during vibriosis events (clinical and oyster) and an Australian isolate collection curated and maintained.
4. A review and refresh of growers recall plans is necessary and growers should participate in simulation training of recall events to improve the practices supporting speedy recalls.
5. Open lines of communication between regulators and industry should be maintained to determine what type of data can be shared and when.
6. Authorities should implement timely closure of growing areas following multiple illnesses in line with ASQAP guidelines.
7. Food Safety Management plans should be reviewed and closely adhered to, especially if there are any future outbreaks.
8. Regulators should hold a post event review that includes industry and research representatives to strengthen working relationships and improve joint outcomes. 

Project products

Fact Sheet • 2025-01-15 • 388.29 KB
2021-097-summary.pdf

Summary

Vibrio parahaemolyticus is a bacteria commonly found in estuarine and marine environments and can cause foodborne illness through the consumption of raw or undercooked seafood.
Scientific information on key pathogenic Vibrio species, their ecology, environmental risk factors and potential mitigation strategies were reviewed for two Vibrio parahaemolyticus outbreaks that were traced back to Pacific oysters produced in South Australia. The first outbreak commenced in March 2021 and the second outbreak started in September 2021.
A range of tools and approaches are available which can be used to identify and assess potential Vibrio risk factors and improved surveillance. These include local and remote-sensing of the environment, microbiological sampling and molecular diagnostics.
 
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