4 results

Resolving the biological stock structure of Southern Ocean crab fisheries

Project number: 2021-025
Project Status:
Current
Budget expenditure: $398,737.00
Principal Investigator: Craig Sherman
Organisation: Deakin University Warrnambool Campus
Project start/end date: 28 Feb 2022 - 30 Mar 2024
Contact:
FRDC

Need

The ability of fisheries managers to control for sustainable harvest and reduce risks of fisheries overexploitation depends largely on an understanding of biological stock structure and recruitment dynamics. This information is critical for understanding the resilience of individual fishing stocks to fishing pressure and environmental disturbance, and the potential for stock replenishment through natural recruitment processes. At present this information is lacking for Australian giant crab (P. gigas) and giant spider crab (L. gaimardii) fisheries.

New opportunities have emerged that greatly enhance our ability to characterise patterns of biological stock structure in fine detail. Modern genomic technologies now allow for rapid and cost-effective assessments of genome wide variation within and between natural populations, allowing for spatial patterns of genetic structure to be characterised with unprecedented sensitivity. Additionally, advances in modelling capabilities are now allowing the unique integration of biological and physical oceanographic data to develop high-resolution models of larval dispersal in complex marine environments. Combining these new tools with traditional methods, such as stable isotopes and acoustic telemetry, provides a unique opportunity to undertake better assessments of biological stock structure and dynamics by accounting for both adult and juvenile dispersal stages.

Our team will leverage existing partnerships with industry stakeholders to undertake a comprehensive assessment of biological stock structure in the P. gigas and L. gaimardii fisheries. We proposed to adopt a multidisciplinary research program that will help to define the geographic boundaries of biological populations and the recruitment potential of individual fishing stocks. Outputs from this project will provide managers with a resource for establishing sustainable management programs in these fisheries that account for patterns of stock connectivity and the sensitivities of individual stocks to environmental disturbance and fishing pressure.

Objectives

1. Produce a regional map showing giant crab and giant spider crab biological stock structure and population connectivity (i.e., dispersal pathways)
2. Identify key stocks of giant crab and giant spider crab across Southern Australia that are major larval sources and well connected, whose careful management can facilitate greater resilience in the fishery
3. Provide a set of management recommendations based on our research findings that will promote more informed and sustainable fishing practices

Sex reversal and sex differentiation in Atlantic salmon (Salmo salar)

Project number: 2018-121
Project Status:
Completed
Budget expenditure: $99,326.00
Principal Investigator: Luis O. Afonso
Organisation: Deakin University Warrnambool Campus
Project start/end date: 16 Sep 2018 - 30 Aug 2020
Contact:
FRDC

Need

Based on the National Fishing and Aquaculture RDE strategy 2016, our project relates to Strategic Goal 3: Benefits and value from fisheries and aquaculture resources (productivity and profitability) are maximised, and aquaculture production increased.

Priority area: Develop new technologies and systems to improve the efficiency of production methods.

This project is needed because the Australian Atlantic Salmon Industry is lacking basic and applied knowledge that could lead to the development of a reliable, non-steroidal method to produce all-female populations of Atlantic salmon. One of the drivers of this project is the fact that eliminating males from the production cycle (grow-out period), will reduce the effects of precocious sexual maturation, including reduced growth, reduced flesh quality, and susceptibility to diseases. As a consequence of eliminating males from the production cycle is a concomitant increase in overall productivity (biomass produced) and profitability

We will use genetic and morphological techniques to improve our understanding of sex differentiation in Atlantic salmon. This knowledge is needed to inform the exact period that sex reversal treatments with exogenous substances are more effective to produce neo-males. This exact timing can then be used in the trial of next generation non-steroidal substances, ensuring that they have the greatest chance of success. This will be the first time that detailed gene expression and morphological information will be collected throughout the entire period of sexual differentiation.

Objectives

1. Investigate morphological sex differentiation processes in male and female Atlantic salmon larvae
2. Quantify the expression of several key genes involved in sex differentiation in male and female Atlantic salmon embryo’s and male and female Atlantic salmon larvae (gonadal and estrogenic non-gonadal tissues)
3. Investigate the effects of MDHT treatment on expression of several key genes involved in sex differentiation in female Atlantic salmon larvae (gonadal and estrogenic non-gonadal tissues)
4. Investigate the effects of DMSO on the masculinizing potential of a single MDHT immersion treatment in female Atlantic salmon.
5. Investigate the effects of the aromatase inhibitor letrozole on expression of several key genes involved in sex differentiation in female Atlantic salmon larvae (gonadal and estrogenic non-gonadal tissues)

Final report

ISBN: 978-0-7300-0340-3
Authors: Luis O.B. Afonso Morgan S. Brown Brad S. Evans
Final Report • 2021-06-01 • 3.14 MB
2018-121-DLD.pdf

Summary

The Tasmanian Atlantic Salmon (Salmo salar) aquaculture industry strives to produce all-female fish, as male Atlantic Salmon are subject to precocious maturation and consequently reduced flesh quality and increased disease susceptibility when reared in high water temperatures. Several fish species, including Atlantic Salmon, can have their natural sex ratio changed by sex reversal, which involves the application of steroid (androgens and estrogens) and non-steroid (aromatase inhibitors) substances (by immersion or inclusion in the diet) during early stages of development, most of the time prior to phenotypic (morphological) sex differentiation. The timing of application of these substances is instrumental for achieving high rates of sex change. All-female populations can be produced by crossing a masculinized female (XX male or neomale) with a normal female (XX female). Therefore, it is important to test the potential of different substances in producing neomales, which then can be crossed with normal females to consistently produce all-female fish. This indirect method leads to the production of individuals that were never exposed to exogenous steroids.
Our studies are indicating that:
1. Based on histology and morphology, sex differentiation in Atlantic Salmon seems to occur by 79 dph.
2. Based on gene expression, three male specific genes are upregulated prior to morphological sex differentiation, whereas in females only one gene is differentially upregulated prior to morphological sex differentiation.
3. Immersion treatment with MDHT and MDHT+DMSO led to masculinization of genetic females to rates between 81 and 87%.
4. Immersion in MDHT led to the upregulation of male specific genes, which occurred 15 days after (dph) the date observed in normal males (34-66 dph) in the sex differentiation study.
The implications of these findings are relevant to the industry and academic/research communities as they demonstrate that is possible to obtain higher rates of masculinization using androgens but not aromatase inhibitors. The higher rates of masculinization will provide more neomales that can be grown to maturity and crossed with normal females to produce all-female populations of Atlantic Salmon. The combination of MDHT + DMSO increased the rate of masculinization (although not significantly different from MDHT alone), and further studies in this area could lead to the optimization of a sex reversal protocol to further increase the rates of masculinization. The sex differentiation and gene expression studies are showing that Atlantic Salmon is a unique species regarding these aspects, and this information needs to be taken into consideration when developing sex reversal protocols.

Population genomic assessment of Australian Blacklip Abalone for abalone viral ganglioneuritis (AVG) resistance

Project number: 2018-057
Project Status:
Completed
Budget expenditure: $165,700.00
Principal Investigator: Adam Miller
Organisation: Deakin University Warrnambool Campus
Project start/end date: 14 Jul 2019 - 29 Oct 2020
Contact:
FRDC

Need

AVG remains the greatest threat to the economic viability and stability of the abalone industry in south-eastern Australia. As a consequence, there is an urgent need for strategic research aimed at determining the likely vulnerability of fisheries to future AVG outbreaks and providing managers with the necessary tools for biosecuring wild and farmed stocks at regional, state and national scales.

The fact that some animals from AVG affected wild stocks survived the disease outbreak suggests they were either fortunate enough to have avoided coming into contact with the virus or are genetically resistant to the disease. A research program aimed at characterising AVG resistance in Australian wild abalone fisheries is expected to provide benefits to wild and farm fisheries at a national scale. If AVG resistance is present in wild abalone stocks, and its genetic basis can be characterised, there will be unique opportunities to:

1) Rapidly and cost-effectively screen stocks across all wild fisheries to determine the spatial prevalence of resistant genotypes and to gain an understanding of how biosecure wild abalone stocks are likely to be in the event of AVG re-emergence
2) Biosecure wild stocks through the movement of animals from ‘AVG resistant’ to ‘AVG vulnerable’ stocks as part of future restocking and translocation activities
3) Biosecure farm stocks across all states of Australia through the establishment of an AVG resistance breeding program

This project involves a direct partnership with AAGA, ACA and VFA and is expected to provide much needed insights into the vulnerability of abalone stocks to future AVG outbreaks, and the tools needed to bolster the biosecurity of wild and farmed abalone stocks. As a result, this project has the potential to dramatically improve the economic viability of this rapidly expanding industry.

Objectives

1. This project will leverage the support of the abalone wild harvest and aquaculture industries, and the Victorian state government to determine if genetic resistance to the AVG virus persists in Australian wild blacklip abalone fisheries. This project will adopt state-of-the-art population genomic technologies to contrast genomic profiles of 350 individual abalone distributed across AVG affected and unaffected blacklip abalone stocks from Victorian Western and Central zone fisheries. Genomic variants differentiating animals from AVG affected and unaffected source stocks are expected to be indicative of a selective sweep and AVG resistance. Genomic variants associated with AVG resistance will act as the necessary markers for surveying the virus resilience/vulnerability of wild fishing stocks, and biosecuring wild fishing and farm stocks by providing a basis for a future virus resistance breeding program.

Final report

ISBN: 978-0-7300-0303-8
Authors: Adam Miller Madeline Toomey Owen Holland Larry Croft Collin Ahrens Craig Sherman Ary Hoffmann Nick Savva Dean Lisson Andrew Clarke
Final Report • 2021-05-01 • 9.55 MB
2018-057-DLD.pdf

Summary

Abalone viral ganglioneuritis (AVG) remains a significant threat to the economic viability and stability of the Abalone industry in south-eastern Australia. Consequently, there is an urgent need for strategic research aimed at determining the likely vulnerability of fisheries to future AVG outbreaks and providing managers with the necessary tools for biosecuring wild and farmed stocks at regional, state and national scales. The fact that some animals from AVG  affected wild stocks survived the disease outbreak in the early 2000s suggests they were either fortunate enough to have avoided coming into contact with the virus or are genetically resistant to the disease. A research program aimed at characterising AVG resistance in Australian wild Abalone fisheries is expected to provide benefits to wild and farm fisheries at a national scale. If AVG resistance is present in wild Abalone stocks, and its genetic basis can be
characterised, there may be opportunities to:
1) Improve industry knowledge of the mechanisms for animal persistence in virus affected Abalone fisheries and on the resilience of Abalone fisheries to environmental change;
2) Screen wild fishing stocks across all wild fisheries to determine the spatial prevalence of resistant genotypes and to help identify stocks are likely to be resilient or vulnerable to AVG reemergence;
3) Explore options for biosecuring wild stocks through the movement of AVG resistant genotypes to ‘AVG vulnerable’ stocks as part of future restocking and translocation activities; and
4) Establish AVG resistant breeding lines for biosecuring farm stocks across all states of Australia.
In this study we performed a genome wide association study on the Blacklip Abalone (Haliotis rubra) using pooled whole genome re-sequencing data from 343 H. rubra specimens representing 14 Victorian fishing stocks varying in historical AVG exposure. Analyses identified approximately 25,000 SNP loci associated with AVG exposure, many of which mapped to genes known to be involved in herpesvirus response pathways and general virus-host interactions in Haliotids and other animal systems. Most notably, candidate loci mapped to 24 genes known to be associated with Haliotid herpesvirus-1 (HaHV-1)
immunity in the New Zealand pāua (H. iris). Experimental trials are now needed to validate if, and how much, resistance is determined by the candidate genotypes identified in this study before the industry can harness them for management purposes with confidence. This study provides the first line of
evidence of genetic changes and adaptive responses in AVG affected H. rubra fisheries. These findings have potential implications for future management which are discussed in detail but will require further investigation.
Industry
PROJECT NUMBER • 2017-113
PROJECT STATUS:
COMPLETED

Elucidating the nutritional requirements of farmed hybrid abalone

The Australian Abalone aquaculture industry continues to search for performance improvements in farmed hybrid Abalone (Haliotis laevigata x H. rubra) to satisfy increasing consumer demand. This project was the first in 25 years to comprehensively profile existing commercial feeds and found large...
ORGANISATION:
Deakin University Warrnambool Campus
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