4 results

Assessing the impacts of gillnetting in Tasmania: implications for by-catch and biodiversity

Project number: 2010-016
Project Status:
Completed
Budget expenditure: $390,623.79
Principal Investigator: Jeremy Lyle
Organisation: University of Tasmania (UTAS)
Project start/end date: 22 Jun 2010 - 14 Feb 2013
Contact:
FRDC

Need

Commercial and recreational fishers are permitted to use gillnets in Tasmania. There are several classes of gillnet distinguished by mesh size - commercial gillnets include, small mesh, graball and shark nets, while recreational gillnets include mullet and graball nets. During the past 5 years around 150 commercial operators each year have reported gillnet use, for an average catch of 200 tonnes of scalefish. Recent information for the recreational sector is limited though recreational netting remains popular, with over 10,000 net licences issued in 2009. Previous surveys indicate that recreational fishers target much the same species as commercial operators.

Over the past decade there have been several management initiatives, including a prohibition on night netting for most areas and, more recently, the introduction of maximum soak times. These initiatives have been designed to improve gillnetting practices, and reduce wastage and impacts on non-target species. Despite this, there have been conspicuous declines in the abundance of several key gillnet species along with increasing community concern about the ecological impacts of gillnetting. This concern has been particularly evident in the debate surrounding the introduction of marine protected areas, with gillnetting identified as a key threat to biodiversity. Furthermore, in the 2009 Scalefish Fishery review DPIPWE identified the need to develop strategic policy in relation to no-netting areas to address issues including resource sharing, wildlife interactions and stock management.

In view of the above, there is an urgent need to better understand how recent management initiatives have influenced netting practices, and to objectively assess the risks and impacts on target and non-target species. Ultimately such an understanding will be pivotal in informing the on-going debate over the future management of gillnetting in Tasmania.

Objectives

1. Synthesise available gillnetting information, with particular reference to links between operational parameters and catch composition
2. Determine catch composition and levels of by-catch associated with the main commercial gillnet fisheries
3. Assess implications of recent management changes on recreational netting practices
4. Assess the relationships between gillnet soak times, capture condition and by-catch survival
5. Evaluate the impacts of gillnetting on the biodiversity of key inshore ecosystems and potential strategies to mitigate these impacts

Aquatic Animal Health Subprogram: vibrios of Aquatic Animals: development of a national standard diagnostic technology

Project number: 2001-628
Project Status:
Completed
Budget expenditure: $226,585.00
Principal Investigator: Jeremy Carson
Organisation: University of Tasmania (UTAS)
Project start/end date: 13 Oct 2001 - 1 Jul 2007
Contact:
FRDC

Need

Diagnostic competence in the identification of Vibrio species is of growing concern with the expansion and diversification of aquaculture in Australia. The urgent need to improve diagnostic capacity has been identified as an essential goal in the SCFA Research Priorities for Australian Fisheries & Aquaculture. Under AQUAPLAN improved diagnostic capacity in aquatic animal diseases was also identified as a major national goal under Projects 3.1 Surveillance & Monitoring, 4.2.9 Diagnostic Resources, 6.2.3 Development of New Diagnostic Tests. The National Workshop on Aquatic Animal Health: Technical Issues (FHMC 1999) identified improved diagnostic capacity for Vibrio species as a matter of priority. More recently, Aquatic Animal Industry Stakeholders nominated the identification of Vibrios as a priority need for funding under the Federal Government Budget Initiative, 'Building A National Approach To Animal And Plant Health' (AQUAPLAN, Business Group (FHMC Sub-Committee, Steering Committee of the FRDC Aquatic Animal Health Sub-Program).

Of major concern is the drive to establish health surveillance programs for aquatic animals. A surveillance program already exists for salmonids in Tasmania and similar programs for abalone in Tasmania, Victoria, South Australia and Western Australia have been identified as a priority need by the FRDC Abalone sub-programme. Similarly, a health surveillance program has been proposed for rock lobster. A major weakness however of these schemes is the lack of diagnostic capacity in veterinary laboratories servicing these health programs (Anon 1999). Given that Vibrio species form over 60% of the bacterial flora associated with these major aquaculture species the usefulness of these proposed surveillance schemes is severely limited.

Competence in identification of Vibrio species is an essential pre-requisite in any surveillance program. It provides the basis to assess the significance of findings, is a means of monitoring populations for the emergence of specific pathogens and underpins successful disease management strategies through the selection of appropriate antibiotics, probiotics or vaccines.

The difficulties identifying Vibrio species were highlighted through a National Fish Disease Bacteriology Workshop (FRDC 00/149). All participating laboratories confirmed the low success rate identifying Vibrio species isolated from aquatic animals and found most identification systems either inefficient, cumbersome or unreliable. Participants endorsed strongly the need to improve diagnostic capacity for Vibrio species.

References
Anon (1999) Gap Analysis of Research for Australian Fisheries and Aquaculture. Report for the Research Committee, Standing Committee for Fisheries and Aquaculture
FHMC (1999) Report of the Workshop on Aquatic Animal Health: Technical Issues. 7-9 December 1998, Attwood, Victoria

Objectives

1. Determine the range of Vibrio species associated with farmed fish, shellfish and crustacea in Australia
2. Undertake a definitive numerical taxonomic analysis to describe and characterise the phenotypes of aquatic animal Vibrios in Australia
3. Develop practical, robust phenotypic identification systems for Vibrio species using computer assisted identification software
4. Develop and implement PCR gene probes for the rapid identification of key bacterial pathogens
5. Produce an ANZSDP for the Identification of Vibrio species in aquatic animals
6. Technology transfer workshop for state veterinary diagnostic microbiologists

Final report

ISBN: 1-86295-368-6
Author: Jeremy Carson

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: development of selective enrichment culture-polymerase chain reaction (SEC-PCR) for the detection of bacterial pathogens in covertly infected farmed salmonid fish

Project number: 1999-201
Project Status:
Completed
Budget expenditure: $155,784.00
Principal Investigator: Jeremy Carson
Organisation: University of Tasmania (UTAS)
Project start/end date: 19 Sep 1999 - 30 Jun 2003
Contact:
FRDC

Need

The ability to detect infected animals is an essential requirement in animal health monitoring and surveillance. A major problem of testing farmed and wild fish is the absence of simple diagnostic tests for the detection of asymptomatic carrier fish. Where tests are available, they are resource intensive and time consuming such as the heat+corticosteroid stress test for furunculosis in salmonids. This test is used for disease control measures in eastern Canada and has been instrumental in limiting spread of furunculosis to sea cage farms (Olivier 1992). Active surveillance of animal populations is considered an important approach in animal health monitoring (Stark 1996) and is of particular relevance with publication by the Office International des Epizooties of its guidelines in the International Aquatic Animal Health Code (Anon 1997) for defining disease-free status.

Demonstration of freedom from disease, both covert and overt, within a region or a country, can be an asset when selling live and uncooked product in markets overseas. As global trade develops, Australia will need to demonstrate freedom from disease not just as a marketing strategy but as an essential requirement of trade and as a means of protecting or limiting the spread of disease.

This project aims to develop a hybrid technology derived from the food industry. It will require adaptation and refinement for use with fish pathogens and development of test protocols for screening adequate numbers of fish. The use of specialised enrichment culture media with the sensitive and specific techniques of PCR should provide a useful and sensitive tool in active surveillance of fish populations and fish products. This technology will also have application in screening ornamental fish entering Australia as well as uncooked fish products.

Detection of bacterial pathogens using immunological markers or DNA are termed proxy tests since the presence of the pathogen is inferred. Proxy tests pose two major problems: firstly what is the relationship of the proxy measure to the intact target pathogen and secondly, what is the biological significance of the proxy test? Validation of proxy tests is a recognised problem that if unresolved can seriously restrict the use of such tests (Hiney 1997). The proposed project solves many of these issues of validation: the primary test requires amplification of the target pathogen by culture and hence is not a proxy test. Detection of the target pathogen after culture utilises a secondary proxy test but it can be internally validated by secondary culture as required. The test system will be evaluated against farmed populations of fish to determine the significance of findings, a pre-requisite for external validation. Correlations of this type have not been undertaken previously and the strategies proposed in this project represent a realistic attempt to convert bench tests into practical and robust diagnostic tools.

References:

Anon (1997) International Aquatic Animal Health Code. 2nd edit. Office International des Epizooties, Paris.
Hiney M. (1997) How to test a test: methods of field validation for non-culture based detection techniques. Bull. Eur. Ass. Fish Path. 17:245-250
Olivier G (1992) Furunculosis in the Atlantic provinces: an overview. Bull. Aquacul. Assoc. Canada 92-1: 4-10.
Stark K D C (1996) Animal health monitoring and surveillance in Switzerland. Aus. Vet. J. 73:96-97.

Objectives

1. Develop a procedure for extracting bacterial DNA from the selective enrichment media that is suitable for the PCR process and is suitable for processing multiple samples.
2. Determine optimum conditions for the PCR test to maximise specificity and sensitivity of the procedure.
3. Develop a test procedure based on immuno-ELISA capture that will verify any positive PCR reactions using a secondary confirmatory gene probe and is suitable for testing multiple samples.
4. Optimise the PCR conditions to incorporate a PCR protection system to protect tests against false positive reactions arising from contamination.
5. Optimise the culture conditions and PCR detection process to ensure the minimum test time between sample collection and test result.
6. Test populations of salmonids with the optimised SEC-PCR system to verify test performance and obtain baseline data on carrier prevalence.

Final report

Author: Jeremy Carson and Teresa Wilson
Final Report • 2003-05-30 • 6.17 MB
1999-201-DLD.pdf

Summary

Bacterial disease is a major cause of stock loss in aquaculture. The severity of infection may range from acute to chronic through to benign. This latter condition, termed covert infection, is insidious, as fish may appear to be outwardly healthy but during periods of stress, these carriers may breakdown leading to spread of infection and development of a disease outbreak.

Several bacterial pathogens, known to exist in Australia and the cause of significant disease episodes in Atlantic salmon and rainbow trout, can cause covert infections including: atypical Aeromonas salmonicida, Lactococcus garvieae, Tenacibaculum maritimum and Yersinia ruckeri.

Early detection of covertly infected fish is considered desirable as it provides a means of determining a suitable disease control strategy such as imposing movement restrictions to prevent the spread of disease, changing management practices to avoid stress or determining the spread of disease in a population at risk of infection. The standard method for identifying carriers is to stress a cohort of fish using a combination of heat andi mmunosuppression to force covertly infected fish to breakdown with disease. This form of testing is undesirable for animal welfare considerations, is difficult to accomplish and takes over three weeks to generate results.

Evaluation of novel polyunsaturated fatty acid (PUFA) producing micro-heterotrophs for incorporation into aquaculture feeds

Project number: 1997-329
Project Status:
Completed
Budget expenditure: $205,077.00
Principal Investigator: Tom Lewis
Organisation: University of Tasmania (UTAS)
Project start/end date: 22 Jun 1997 - 31 May 2002
Contact:
FRDC

Need

Polyunsaturated fatty acids (PUFA) are essential components in aquaculture diets, where an artificial food chain must be established (Bottino 1974; Rimmer et al. 1994). For many larval, or fingerling aquaculture species, the provision of PUFA (especially the omega-3 fatty acids EPA, DHA, and the omega-6 fatty acid AA is critical, and must be provided from either a "live" diet, usually via rotifers (eg. Brachionus plicatilis) or brine shrimp (Artemia sp.) as intermediates (Ostrowski & Divakaran 1990, Mourene and Tocher 1993a,b; Bell et al 1995; Southgate & Lou 1995) or an artificial diet. As adults, many species of finfish are reared on artificial (pelletised) foods that must also contain PUFA.

Commercial sources of PUFA for use within the mariculture industry are currently restricted to certain fish oils and microalgal species which are, respectively, under threat of over-exploitation and expensive to produce (New and Csavas 1995, Tacon 1995). The recent discoveries of bacteria and fungi that synthesise PUFA provide a novel and timely opportunity to develop biotechnological processes for sustainable and relatively cheap PUFA production.

Particular opportunities arise from the recent isolation of the following organisms:

1) Antarctic bacteria that produce the n-3 fatty acids EPA and DHA, and the n-6 fatty acid AA. (Antarctic CRC and University of Tasmania)

2) Marine fungi that produce high levels of both DHA and EPA. (CSIRO Division of Marine Research)

Research combining skills and expertise in microbiology, cell culturing and manipulation, marine oils and lipid chemistry, biotechnology and aquaculture nutrition are required to take advantage of the industrial opportunity presented. Scientific advances can be made in each of these areas.

In microbiology there is a need to develop targeted, intelligent screening protocols to optimise recovery of bacteria with biotechnologically useful traits such as PUFA production. There is also a need to integrate current knowledge of factors which affect microheterotroph growth and metabolic processes into the development of techniques to optimise production of desired compounds. Research integration is expected to lead to the development of technology with which high productivity can be achieved while using cheap culture media.

The application of state-of-the-art techniques in lipid chemistry will be applied to qualitatively and quantitatively evaluate PUFA production by microheterotrophs. The biotechnological challenge will involve devising stable formulations of whole cells and/or their extracts, and to transfer this technology from laboratory-scale trials through pilot-scale to commercial production systems.

As discussed above, the potential Australian Bacterial Single Cell (BSC) product(s) in this application should be able to meet some or all of the requirement for n-3 and n-6 fatty acids of larval and adult aquaculture species. In addition, the BSC products should be also able to provide a good protein source, and may have the potential to improve the fatty acid profile of product flesh. Thus, the proposed Australian product may have the potential to replace a significant proportion of the fish meal and fish oil currently used.

Industrial advantage will be gained from the application of the scientific knowledge developed during this project, in the incorporation of PUFA-producing bacteria or products derived therefrom into aquaculture food-chains.

Objectives

1. To develop targeted screening programs for the isolation and characterisation of PUFA-producing bacteria and other microheterotrophs
2. To maximise PUFA production by manipulation of specific microheterotroph culture conditions
3. To develop product formulations, including PUFA enrichment of live feeds, as a basis for commercial production of suitable strains.
4. To conduct feeding trials, using formulations to be developed during this project, using Atlantic salmon larvae (finfish, artificial feed), Flounder larvae (finfish, live feed) and Prawns (crustacea, artificial feed) as test species