2 results

Modelling environmental changes and effects on wild-caught species in Queensland

Project number: 2019-013
Project Status:
Completed
Budget expenditure: $257,459.05
Principal Investigator: Jerzy A. Filar
Organisation: University of Queensland (UQ)
Project start/end date: 19 Nov 2019 - 30 May 2021
Contact:
FRDC

Need

A better understanding of the impacts of environmental drivers on the population dynamics and abundance of key fishery species can inform flexible management decisions that pre-empt both risks of overfishing under adverse environmental conditions and opportunities for increased harvest under favourable conditions. This is increasingly important as shifting environmental dynamics drive geographical shifts in fish stocks.

This project will identify environmental variables influencing the abundance of three priority fishery species, quantify those relationships to enhance their stock assessment models, and develop a forward projection tool to inform adaptive management of each fishery. Target species - Spanner Crabs, Snapper and Pearl Perch – were selected based on key interest to management of fisheries in Queensland and NSW. Some associations between these species and certain abiotic environmental factors are already known, but there is yet to be a rigorous and comprehensive approach to this work, with the explicit goal of incorporating abiotic influences into Queensland and NSW stock assessments.

The project has three key objectives: (1) Find indices of association between measures of abundance and key environmental drivers; (2) Use these indices to enhance the existing stock assessment model for each species; and (3) Enable forecasting of environmentally driven fluctuations in targeted species’ abundance, including enhancing Management Strategy Evaluations (MSEs).

In particular, environmental correlates will be valuable to fisheries managers by: (a) reducing the uncertainty in biomass estimates, (b) explaining fluctuations in abundance, and (c) characterising what is a “bad year” for each species. Such information can be incorporated into MSEs.

The “Queensland Sustainable Fisheries Strategy 2017-2027” identifies several challenges to fulfilling its mission of ensuring the sustainability of fisheries and the economic viability of fishing sectors. The first of these is “gaps in monitoring and research, which limit the ability to make timely, evidence-based decisions”. This project will close some of these gaps and assist in formulating measures for promoting stock recovery and adaptive management.

Objectives

1. Find indices of association between measures of abundance and environmental drivers.
2. Improve stock assessment models, for targeted species, by incorporating environmental drivers.
3. Enable forecasting of environmentally driven fluctuations in species’ abundance, including enhancing Management Strategy Evaluations for targeted species with the help of a rapid adaptive projections tool (RAPT).

Final report

ISBN: 978-1-74272-356-3
Authors: J. A. Filar A.J. Courtney L. J. Gibson R. Jemison S. Leahy Y. Lei M. Mendiolar J. Mitchell B. Robson C. Steinberg S. Williams W.-H. Yang N. Ye.
Final Report • 2021-12-31 • 12.89 MB
2019-013-DLD.pdf

Summary

This project studied environmental factors which may be influencing the recruitment, catchability or productivity of Snapper, Pearl Perch, and Spanner Crab stocks in Queensland. Two environmental variables: GSLA and Chl-a were found to have strong associations with either abundance or catchability across the three target species. These associations occurred at spatio-temporal scales relevant to each species’ biology. A third variable, SST, also had strong associations with Snapper.

 

Importantly, all three of these environment variables, GSLA, SST and Chl-a were found to have certain consistent long-term trends, with rates of change depending somewhat on the region under consideration. We demonstrated that incorporating these environmental variables into simple surplus production stock assessment models results, under some scenarios, in delays in stock recovery. This assumed that the above trends of GSLA, SST and Chl-a are sustained and the direction and strength of the identified associations are maintained.

A trivalent vaccine for sustainable Yellowtail Kingfish growout

Project number: 2018-101
Project Status:
Current
Budget expenditure: $809,040.00
Principal Investigator: Andrew C. Barnes
Organisation: University of Queensland (UQ)
Project start/end date: 29 Nov 2018 - 14 Dec 2021
Contact:
FRDC

Need

Optimised vaccines deliver improved animal health and avoid use of antimicrobials in the production of fish (Sommerset et al., Expert Review Vaccines 2005, 4, 89-101.). Australian YTK Photobacteriosis outbreaks have been reported in association with Photobacterium damselae subsp damselae (Pdd), Photobacterium damselae subspecies piscicida(Pdp) and various Vibrio harveyi(Vh) isolates (Matt Landos, Nicky Buller, unpublished). To support stable production of high quality finfish highly efficacious controls of microbial diseases are critical. Successful examples are currently employed in salmon (Yersinia ruckeri, Vibrio anguillarum) and barramundi (Streptococcus iniae) whereby disease outbreaks drove the need for vaccine development. These conditions are now both well controlled in vaccinated populations and have dramatically reduced reliance on administration of antibiotics.
Currently, crude autogenous vaccines are in use with YTK for control of only Pdd in South Australia and Western Australia with some reported success. Recently Pdp has emerged as a significant pathogen in South Australian outbreaks. Reliable vaccination against Pdp has proven difficult in international experience using traditional autogenous and generic killed vaccine methods, hence increasingly research is exploring DNA vaccination methods to improve protection against this pathogen (Kato et al., Vaccine 2015, 33 (8), 1040-1045). It is also probable that antigenic diversity had been underestimated, given high diversity that recent sequencing technology has revealed in our preliminary research . Preparedness for the emergence of highly pathogenic Pdp strains is prudent to allow rapid controls to be developed, without incurring business-ending losses within the growing aquaculture sector, or having high levels of reliance on oral antibiotics. Genetic sequence data on isolates generated through this project can be used for epidemiological modelling, new rapid diagnostic typing tools and immediate response if disease emergence occurs in other finfish industries. Pdp is acknowledged as a serious pathogen internationally in species including yellowtail, cobia, flounder, seabream, pompano and sea bass. (Andreoni et al.J Immunol Res. 2014).

Objectives

1. Generate comprehensive genome database of Australian isolates of Pdd, Pdp and Vh associated with Photobacteriosis outbreaks in YTK
2. Generate and supply diagnostic laboratory reagents and methods for typing Photobacterium and Vibrio isolates associated with YTK outbreaks.
3. Deliver optimised monovalent and multivalent (Pdd, Pdp, Vh) killed vaccines, with production outline, appropriate adjuvant type, dose, safety and efficacy profile in YTK, ready for manufacture.
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