3 results

A novel method for obtaining age compositions from ancillary biological data and it’s potential for cost reductions in stock assessments

Project number: 2005-023
Project Status:
Completed
Budget expenditure: $99,882.65
Principal Investigator: Simon Robertson
Organisation: Agriculture Victoria
Project start/end date: 30 Aug 2005 - 30 Jun 2009
Contact:
FRDC

Need

Age composition data provides the key information necessary to effectively manage fisheries. The proposal provides a mechanism where age composition data can be gained using length frequency data and age composition data from different years and sampling events, which has previously been impossible. The benefits will be a reduced need for production ageing, more timely age composition data and the ability to construct age composition data from historical length frequency data where no samples were collected for ageing.

Currently the Age-Length Key (ALK) is the most widely used numerical method for assessing the age composition in a large sample of length-frequency data. However, the application of ageing data in this approach is restricted to the original sample of length distribution (ageing data from the same year the length-frequency sample is taken). Due to this severe limitation, the ageing information must be regenerated for each new data sample. Using the Fredholm First Kind equations, previous years ageing data can be used to generate the underlying age composition from the current length-frequency data. Furthermore, the ageing data may be added to include many years, improving the robustness of the statistic which can then be used to decompose the underlying age distribution from the given length frequency.

As noted by a number of referees, the major problem with the current methods is variable recruitment. We have demonstrated that the technique is tolerant to the most extreme changes in age frequency (see accompanying text). These extreme changes in age frequency are greater than any changes that could occur naturally through recruitment. The issue of variable growth may affect the efficacy of the approach, but to our knowledge, has only been observed in two species. These are black bream and blue grenadier. It is proposed that the technique be demonstrated on blue grenadier in the first year.

The cost of collecting ageing data is high, with approximately $150,000 spent each year on ageing samples from commercially important species within the South East Fishery. Due to the cost, the number of species aged is not optimal and species are prioritised on a scientific and social-political basis. The cost-benefit of applying this approach is intuitively a large reduction in cost of ageing to industry and more timely information on the age structure of the population. A formal cost benefit analyses will need to be conducted on a species by species basis. This is a function of different cost structures for ageing different species, different numbers of samples that need to aged for each species. These different numbers of estimates that need to be made for each species is primarily due to longevity and stock structuring.

The age-structured data obtained from this project will benefit the South East Trawl Fishery, the Great Australian Bight Trawl Fishery and the Gillnet, Hook and Trap Fishery which are supported by The Integrated Scientific Monitoring Program (ISMP) and various other stock assessment programs that rely on age-structured data.

Further, age composition data will be able to be reconstructed historically from species where samples were not aged but length-frequency data were collected. This will enable age-structured population analysis where the lack of ageing data prevented these stock assessment techniques from being previously used. The net effect of this approach is to greatly improve the knowledge base from which species are managed. One of key advantages of this approach is, if successful, will at the very least compliment current methods and provide temporal and spatial coverage of age composition information which is currently cost prohibitive and only collected for a few, high value species.

The implication of a technique that can provide age-composition data free from the restriction of those associated with the ALK is more cost-effective resource management.

The proposal has been developed in two parts, the first component is a 'Proof of Concept Study' where the use of the Fredholm First Kind Equations to provide age compositions from length frequency data will be further examined. If this is not assessed as successful in a workshop environment, the project will be terminated at the end of the first year. The second and third year will examine a broad range of species.

Objectives

1. During first 12 months provide a Proof of Concept Study on two species. One of the species with a short longevity and stable age composition over time and the second, with variable recruitment and higher longevity. The proposed species for this objective will be school whiting and blue grenadier.
2. Using Central Ageing Facility data, determine which commercially important fish stocks and associated data provide sufficient information for estimation of the age composition from length frequencies
3. Apply limited length-at-age data with extensive length-frequency data to improve time series of age compositions for fish stock assessment.
4. Determine the appropriate sample size for collection of age data.
5. Examine robustness of the numerical methods to length-specific selectivity.
6. Compare the new techniques with existing numerical methods.
7. Develop user friendly software and data environment for numerical reconstruction of cohorts and age groups.
8. Disseminate method to a broad audience of end-users
9. Provide cost-benefit analysis for each species undertaken comparing the financial benefit of using the new technique to the cost associated using traditional techniques. The objective will be delivered as species are examined.

Final report

ISBN: 978‐1‐74264‐135‐5
Author: Simon Robertson

Stock discrimination of blue-eye trevalla (Hyperglyphe antarctica) from Australian shelf waters and offshore seamounts and New Zealand

Project number: 2003-045
Project Status:
Completed
Budget expenditure: $269,037.00
Principal Investigator: Jeremy Hindell
Organisation: Agriculture Victoria
Project start/end date: 30 Aug 2003 - 30 Apr 2006
Contact:
FRDC

Need

Blue-eye trevalla is an important species in the South East Fishery. Blue-eye trevalla is taken in large quantities by the trawl and non-trawl sectors in south eastern coastal waters and around offshore seamounts. Despite the high value of this species in the trawl and non-trawl fisheries, however, there is limited information on the stock structure and appropriate management units. Bolch et al. (1993) concluded there was sufficient gene flow to prevent genetic differentiation between blue-eye trevalla off Tasmania, South Australia and NSW, but the sample sizes were small, there are limitations to allozyme electrophoresis (the method they used), and they did not sample fish from NZ. Ward and Last (1993) suggested that, given the known limitations of allozyme electrophoresis, further genetic studies based on mitochondrial DNA analyses and larger samples be undertaken. As a consequence, the relationship between fish caught off the south eastern Australian coast and those taken from offshore seamounts is unknown. The need to identify the stock structure of Blue-eye trevalla has also been identified as a high priority by the blue-eye working group and SEFAG.

In recent years, developmental trawl fishing has been occurring in the East Coast Deep Water (ECDW) fishery. Significant amounts of blue-eye trevalla have been caught in this fishery from grounds well to the east of 157ºE, and currently these fish are under the same quota restrictions that apply to the rest of the SEF trawl fishery. The large distances between the ECDW fishing grounds and grounds where most of the east coast blue-eye are caught has led fishers to question whether the ECDW fish can be considered part of the stock upon which the TAC was based. There is an urgent need to assess the stock structure of blue-eye trevalla caught throughout the SEF, the ECDW fisheries and New Zealand. The results from a study assessing the stock structure of this species will provide managers with information on potential management units.

A proposal to investigate the relationships between blue-eye trevalla caught in the ECDW zone and the SEF was submitted to AFMA in 2001, and although supported, it was not funded at this time for a number of reasons. In response to suggestions from AFMA, the MACs and SEFAG, it was decided that the proposal should be re-submitted in 2002. To address suggestions from industry and management groups that the stock structure of blue-eye needed to be evaluated over a much larger area, the extent of the project was expanded to include blue-eye samples from across south eastern Australia, including offshore seamounts (such as those off Tasmania, Norfolk and Lord Howe Islands) and New Zealand.

Objectives

1. To use otolith microchemistry and shape analyses to assess the stock relationships between blue-eye trevalla caught in 8 regions (east , west and south Tasmania, west Victoria/South Australia, east Victoria and East Coast Deep Water, Queensland/NSW shelf waters and the west coast of New Zealand)(YEAR 1).
2. To a) validate the results from otolith microchemistry and shape analyses, and b) better assess stock structure of blue-eye trevalla in the regions identified in objective 1, using mitochondrial DNA analyses (YEAR 2).
3. To determine a suitable approach for assessing stock structure in blue-eye trevalla in south-east Australia, and make recommendations on the most appropriate methods for future work (including sample size and spatial/temporal sampling), to better understand the stock structure of blue-eye trevalla in the SEF and ECDW fisheries.
4. To utilise the results from all analyses in the assessment and management of blue-eye trevalla via meetings of the relevant stakeholder groups including SETMAC, SENTMAC, AFMA and the blue-eye working group.

Final report

ISBN: 1-74146-575-3
Author: Jeremy Hindell
Final Report • 2006-12-13
2003-045-DLD.pdf

Summary

This work is principally about identifying the best method for examining the population structure of blue-eye trevalla (Hyperoglyphe antarctica). It is not, and was never intended to be, an exhaustive assessment of stock structure of blue-eye trevalla in Australia’s Fishing Zone. As such, findings on stock structure per se are preliminary only.
 
Blue-eye trevalla are a key economic species in Australia’s Fishing Zone. They are caught from NSW, around Tasmania, to Western Australia. Blue-eye are caught in both the trawl and non trawl fishing sectors, within which they are regarded as non-target and target species, respectively. The total allowable catch in 2004 was 743 tonnes across the non-trawl and trawl sectors, but only 651 tonnes were actually caught. Nonetheless, this catch had an estimated market value of more than $5 million AUD (based on average prices paid at the Sydney Fish Market). Less than 1% of blue-eye landings were discarded across the fisheries. The non trawl catch in 2004 was 567 tonnes, compared to 84 tonnes taken in the trawl sector. Most of the non-trawl catch is now taken by long lines off the east coast of Tasmania; since 2002 there has been a decline in the catch taken on drop lines. Since 1999 there has also been a decline in catches of blue-eye in the trawl sector.
 
Blue-eye trevalla are managed as a single stock. Research to date supports this management regime. Results from previous work on genetics (allozyme analyses) suggest that gene flow is sufficient to prevent genetic differentiation among fish collected from seamounts off NSW to those off Tasmania, and around the Tasmanian coast. Tagging studies suggest that juvenile fish (around 50 cm length) can move from NSW slope waters to those off eastern Tasmania; still smaller individuals (< 20 cm in length) can possibly drift between Australia and New Zealand. Despite this evidence, there is some uncertainty in whether fish from offshore seamounts, particularly those in the East Coast Deep Water, are the same
‘stock’ as those along Australia’s continental shelf.
 
This study used 4 different approaches (otolith shape analysis, otolith elemental microchemistry, otolith stable isotope analysis, mitochondrial DNA) to compare which method best delineated subpopulations of blue-eye sampled from 6 regions of the South East Fishery (SEF: NSW, east Victoria, east, south and west Tasmania, and South Australia), the East Coast Deep Water region, and New Zealand – 8 regions in total.
 
Samples of fish were collected opportunistically from commercial landings in each of these regions. Only fish with a fork length of approximately 50 cm or less were used. This enabled us to restrict the age of the fish we sampled, thereby ensuring that patterns among regions were a reflection of differences in stock structure rather than age. We collected at least 40 samples (individual fish) from all of the regions except NSW, from which we could only collect 30 fish (20 of which were of the ‘correct’ size). For each fish, we recorded the fork length, identified the sex (where possible), removed the otoliths for shape and microchemical analyses, and took tissue samples for genetic analyses.

Development of an artificial neural network for automated age estimation

Project number: 1998-105
Project Status:
Completed
Budget expenditure: $132,072.00
Principal Investigator: Simon Robertson
Organisation: Agriculture Victoria
Project start/end date: 14 Jun 1998 - 31 Mar 2002
Contact:
FRDC

Need

Current age determination methods, even when aided by image analysis software still depend on interpretation by an experienced "reader". The process of ageing is also laborious, time consuming and hence, relatively expensive. For production ageing, where there is an ongoing requirement for age estimates, there is a problem of consistency of interpretation. At present, when readers change, there is a substantial training and verification period needed to ensure that the new reader is interpreting otolith structure in a consistent and correct manner. Automatic ageing would have the primary advantage of being a far more objective method than is possible with even the best training, reducing discrepancies both between readers and organisations. This factor will increase the precision of estimates and therefore provide greater confidence for the stock assessment process. Benefits associated with the development of this technique also include the reduced sample processing time which would increase the number of samples able to be processed and hence, reduce the cost.

The pilot project which has been completed has demonstrated the potential for artificial neural networks to objectively and consistently classify samples of some species. With refinements of the system, it should be applicable to any species for which production ageing is required.

Objectives

1. Compare the effect of different forms of data input on the performance of an ANN model for automatic ageing.
2. Compare the effect of different forms of ANN models on their performance.
3. Develop a protocol for the application of an ANN model to the process of automatic ageing.

Final report

ISBN: 0-7311-5038-4
Author: Simon Robertson