39 results

Future-proofing Lactococcus garvieae vaccines for Australian farmed trout in a warming climate

Project number: 2022-093
Project Status:
Current
Budget expenditure: $0.00
Principal Investigator: Andrew C. Barnes
Organisation: University of Queensland (UQ)
Project start/end date: 25 May 2023 - 28 Jan 2027
Contact:
FRDC
SPECIES

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence

Modelling environmental changes and effects on wild-caught species in Queensland

Project number: 2019-013
Project Status:
Completed
Budget expenditure: $257,459.05
Principal Investigator: Jerzy A. Filar
Organisation: University of Queensland (UQ)
Project start/end date: 19 Nov 2019 - 30 May 2021
Contact:
FRDC

Need

A better understanding of the impacts of environmental drivers on the population dynamics and abundance of key fishery species can inform flexible management decisions that pre-empt both risks of overfishing under adverse environmental conditions and opportunities for increased harvest under favourable conditions. This is increasingly important as shifting environmental dynamics drive geographical shifts in fish stocks.

This project will identify environmental variables influencing the abundance of three priority fishery species, quantify those relationships to enhance their stock assessment models, and develop a forward projection tool to inform adaptive management of each fishery. Target species - Spanner Crabs, Snapper and Pearl Perch – were selected based on key interest to management of fisheries in Queensland and NSW. Some associations between these species and certain abiotic environmental factors are already known, but there is yet to be a rigorous and comprehensive approach to this work, with the explicit goal of incorporating abiotic influences into Queensland and NSW stock assessments.

The project has three key objectives: (1) Find indices of association between measures of abundance and key environmental drivers; (2) Use these indices to enhance the existing stock assessment model for each species; and (3) Enable forecasting of environmentally driven fluctuations in targeted species’ abundance, including enhancing Management Strategy Evaluations (MSEs).

In particular, environmental correlates will be valuable to fisheries managers by: (a) reducing the uncertainty in biomass estimates, (b) explaining fluctuations in abundance, and (c) characterising what is a “bad year” for each species. Such information can be incorporated into MSEs.

The “Queensland Sustainable Fisheries Strategy 2017-2027” identifies several challenges to fulfilling its mission of ensuring the sustainability of fisheries and the economic viability of fishing sectors. The first of these is “gaps in monitoring and research, which limit the ability to make timely, evidence-based decisions”. This project will close some of these gaps and assist in formulating measures for promoting stock recovery and adaptive management.

Objectives

1. Find indices of association between measures of abundance and environmental drivers.
2. Improve stock assessment models, for targeted species, by incorporating environmental drivers.
3. Enable forecasting of environmentally driven fluctuations in species’ abundance, including enhancing Management Strategy Evaluations for targeted species with the help of a rapid adaptive projections tool (RAPT).

Final report

ISBN: 978-1-74272-356-3
Authors: J. A. Filar A.J. Courtney L. J. Gibson R. Jemison S. Leahy Y. Lei M. Mendiolar J. Mitchell B. Robson C. Steinberg S. Williams W.-H. Yang N. Ye.
Final Report • 2021-12-31 • 12.89 MB
2019-013-DLD.pdf

Summary

This project studied environmental factors which may be influencing the recruitment, catchability or productivity of Snapper, Pearl Perch, and Spanner Crab stocks in Queensland. Two environmental variables: GSLA and Chl-a were found to have strong associations with either abundance or catchability across the three target species. These associations occurred at spatio-temporal scales relevant to each species’ biology. A third variable, SST, also had strong associations with Snapper.

 

Importantly, all three of these environment variables, GSLA, SST and Chl-a were found to have certain consistent long-term trends, with rates of change depending somewhat on the region under consideration. We demonstrated that incorporating these environmental variables into simple surplus production stock assessment models results, under some scenarios, in delays in stock recovery. This assumed that the above trends of GSLA, SST and Chl-a are sustained and the direction and strength of the identified associations are maintained.

A trivalent vaccine for sustainable Yellowtail Kingfish growout

Project number: 2018-101
Project Status:
Current
Budget expenditure: $809,040.00
Principal Investigator: Andrew C. Barnes
Organisation: University of Queensland (UQ)
Project start/end date: 29 Nov 2018 - 14 Dec 2021
Contact:
FRDC

Need

Optimised vaccines deliver improved animal health and avoid use of antimicrobials in the production of fish (Sommerset et al., Expert Review Vaccines 2005, 4, 89-101.). Australian YTK Photobacteriosis outbreaks have been reported in association with Photobacterium damselae subsp damselae (Pdd), Photobacterium damselae subspecies piscicida(Pdp) and various Vibrio harveyi(Vh) isolates (Matt Landos, Nicky Buller, unpublished). To support stable production of high quality finfish highly efficacious controls of microbial diseases are critical. Successful examples are currently employed in salmon (Yersinia ruckeri, Vibrio anguillarum) and barramundi (Streptococcus iniae) whereby disease outbreaks drove the need for vaccine development. These conditions are now both well controlled in vaccinated populations and have dramatically reduced reliance on administration of antibiotics.
Currently, crude autogenous vaccines are in use with YTK for control of only Pdd in South Australia and Western Australia with some reported success. Recently Pdp has emerged as a significant pathogen in South Australian outbreaks. Reliable vaccination against Pdp has proven difficult in international experience using traditional autogenous and generic killed vaccine methods, hence increasingly research is exploring DNA vaccination methods to improve protection against this pathogen (Kato et al., Vaccine 2015, 33 (8), 1040-1045). It is also probable that antigenic diversity had been underestimated, given high diversity that recent sequencing technology has revealed in our preliminary research . Preparedness for the emergence of highly pathogenic Pdp strains is prudent to allow rapid controls to be developed, without incurring business-ending losses within the growing aquaculture sector, or having high levels of reliance on oral antibiotics. Genetic sequence data on isolates generated through this project can be used for epidemiological modelling, new rapid diagnostic typing tools and immediate response if disease emergence occurs in other finfish industries. Pdp is acknowledged as a serious pathogen internationally in species including yellowtail, cobia, flounder, seabream, pompano and sea bass. (Andreoni et al.J Immunol Res. 2014).

Objectives

1. Generate comprehensive genome database of Australian isolates of Pdd, Pdp and Vh associated with Photobacteriosis outbreaks in YTK
2. Generate and supply diagnostic laboratory reagents and methods for typing Photobacterium and Vibrio isolates associated with YTK outbreaks.
3. Deliver optimised monovalent and multivalent (Pdd, Pdp, Vh) killed vaccines, with production outline, appropriate adjuvant type, dose, safety and efficacy profile in YTK, ready for manufacture.

Vaccination for emergency and long-term control of nodavirus in Australian marine aquaculture

Project number: 2018-098
Project Status:
Completed
Budget expenditure: $567,695.00
Principal Investigator: Andrew C. Barnes
Organisation: University of Queensland (UQ)
Project start/end date: 28 Mar 2019 - 30 Jan 2023
Contact:
FRDC
SPECIES

Need

The grouper industry is new but growing in Australia with recent new private sector investment in the hatchery in Cairns. However, all current grow out is affected by nodavirus outbreaks which have been both acute and severe. Without a solution the industry will not be able to continue. Fortunately, nodavirus is preventable by vaccination and there is local capacity to produce. Whilst there is currently insufficient demand to allow a fully privately financed vaccine initiative, with an emergency vaccine put in place and a registration data pack established, the industry is predicted to grow to a point where vaccine production by the private sector will become self-sustaining. This project will deliver an emergency vaccine to assist farmers through 2018/2019 grow out. It will build capability in vaccination of grouper in the industry. Most importantly it will provide the efficacy data, optimisation and formulation data with documentation appropriate for future licensing of a vaccine for use in Australia.

Objectives

1. An emergency vaccine to prevent nodavirus in the Queensland grouper cohort for stocking in spring/summer 2018
2. A data pack suitable for registration of an optimally formulated nodavirus vaccine for Australia

Final report

ISBN: 978-1-74272-399-0
Authors: Rosemary Thwaite Minami Kawasaki Angus Li Kelly Condon Richard Knuckey Bradley Cherrie Mark White Matt Landos and Andrew C Barnes
Final Report • 2023-02-01 • 18.85 MB
2018-098-DLD.pdf

Summary

Rocky Point Aquaculture in southeast Queensland experienced a disease outbreak in cage-reared giant grouper (Epinephelus lanceolatus) in late summer and autumn 2018 resulting is severe losses caused by a Betanodavirus. Following a request from the farm owner, Serena Zipf in July 2018, Dr Andrew Barnes from The University of Queensland, designed and built a recombinant protein subunit vaccine against the Betanodavirus and supplied the construct and production outline to Tréidlia BioVet Pty Ltd (Sydney) for manufacture in September 2018. Under direction from Dr Matt Landos and Dr James Fensham (Future Fisheries Veterinary Services) and with permission from Dr Richard Knuckey (General Manager, The Company One), juvenile grouper were vaccinated under a research permit from the Australian Pesticides and Veterinary Medicines Authority (APVMA) at The Company One (TCO) Cairns hatchery in October 2018, and shipped for grow-out at Rocky Point Aquaculture in December 2018, less than 6 months after concept discussion. Vaccination coincided with a reduction in the severity of outbreaks and from mid-2019 to 2022 the farm was free from nodavirus outbreaks. In summer 2022, a persistent low-level  outbreak was recorded at the farm in vaccinated fish, although again well below the mortality levels of the 2018 outbreak. In controlled laboratory challenge studies by Dr Kelly Condon at James Cook University, the vaccine has been shown to be >90% effective. Vaccinated juveniles have also been purchased by Noosa Ecomarine and the vaccine has also coincided with substantially reduced mortalities by nodavirus in their recirculating aquaculture facility.

Using commercial and recreational fisher knowledge to reconstruct historical catch rates for Queensland Snapper (Chrysophrys auratus), Spanish Mackerel (Scomberomorus commerson) and Coral Trout (Plectropomus spp.): long-term data for incorporation into future stock assessments

Project number: 2013-018
Project Status:
Completed
Budget expenditure: $44,800.00
Principal Investigator: Ruth H. Thurstan
Organisation: University of Queensland (UQ)
Project start/end date: 30 Jun 2013 - 22 Dec 2013
Contact:
FRDC

Need

It is acknowledged that there is a lack of information on past fisheries (i.e. catch rates, fishing effort, proportion of recorded landings) throughout Queensland prior to the start of individual logbook records in 1988 (Halliday and Robins 2007). Yet information prior to this period is critical for successful management, as longer-term perspectives provide data that can help reduce uncertainty associated with projected historical catch levels (Campbell et al. 2009). Long-term data also informs past fishery states, thus equipping managers, stock assessment modellers and the fishing industry with knowledge of historical fishery trends. This can then be used to facilitate informed discussion of appropriate management methods into the future.

During a review of the 2008 Queensland snapper stock assessment, Francis (2009) called for consultation of ‘knowledgeable people’ in order to reconstruct past catch histories, thereby improving estimates for future stock assessments. We aim to fill this gap in research for two fish species that are of particular economic, social and cultural importance to Queensland, pink snapper (Pagrus auratus) and Spanish mackerel (Scomberomorus commerson), through the collation and synthesis of commercial and recreational fisher knowledge.

Our project has broad application to the FRDC’s Research Plan, as it provides a long-term view of the use and management of aquatic resources. It applies to the National Fishing and Aquaculture RD&E Strategy, as it will gather knowledge that can inform environmentally sustainable fishing through determining past changes to catch rates, locations fished and relative fishing effort. In addition, perceptions of changes to fisheries and the broader ecosystem as a result of non-fishery drivers, i.e. coastal development, resource management measures and social drivers of change, will be gathered. Our proposed research will focus upon commercial and recreational fishers, thus incorporating the two major sectors involved in wild-catch fisheries.

Objectives

1. • To reconstruct relative changes in abundance and distribution of pink snapper (Pagrus auratus) and Spanish mackerel (Scomberomorus commerson), using commercial and recreational fishers’ testimony and historical data.
2. • ‘To use fishers’ data to expand our temporal scope of knowledge by providing robust historical data, thereby reducing uncertainty in past exploitation rates and making information available for potential use in future management decisions.’
3. • To determine the impact of evolving fishing technologies, fishing effort and changing management regimes upon fish catches and abundance over time.
4. • To compare perceptions of change between commercial and recreational groups, and identify common areas/species of concern held by both groups.

Tactical Research Fund: Developing a dynamic regional brand - focus on flavour

Project number: 2010-228
Project Status:
Completed
Budget expenditure: $74,923.00
Principal Investigator: Heather Smyth
Organisation: University of Queensland (UQ)
Project start/end date: 31 Jul 2011 - 31 Jan 2013
Contact:
FRDC

Need

The Eyre Peninsula seafood industry formed Brand Eyre Peninsula in 2006, a collaborative market development program aimed to increase sales and market position in the domestic and export market. Integral to the brand is the education of the species’ attributes to all key stakeholders of the value chain including seafood wholesalers, retailers, food service and media. The results of market development initiatives have been communicated to the owner, head buyer or executive chef of businesses, however, the program failed to support training for key staff such as restaurant front of house and retail counter staff. There is a need for a simple, cost effective training tool due to the high turnover of these positions.

Australian and export clients have consistently requested a “Seafood Flavour Wheel” to assist in menu planning and tasting notes for chefs and sommeliers. Once developed, this tool would be distributed to an initial 500 existing clients to support immediate industry and consumer education. The development of the “Seafood Flavour Wheel” has an extensive level of support from its current client base.

The proposed “Seafood Flavour Wheel” will be a training guide benchmark and has the potential to expand to an Australian guide, inclusive of all seafood species. Specifically, the development of the Eyre Peninsula “Seafood Flavour Wheel” will assist the lack of knowledge and appreciation for the flavours of a target group of seafood species specific to that region.

Equipped with this knowledge, a united industry marketing approach will effectively connect customers with an experience of the unique regional flavour qualities of Eyre Peninsula’s premium seafood. Through this experience, customers will learn to recognise the sensory attributes of Eyre Peninsula seafood and distinguish these products from those originating from other Australian and international regions.

Objectives

1. To develop a set of accurate and informative educational tools delivering against trade requirements
2. To establish the basis of a uniform and coordinated educational program that features a target list of seafood species available on the Eyre Peninsula including Southern Bluefin Tuna, Mussels, Pacific Oysters, Spencer Gulf Prawns, Yellowtail Kingfish, Sardines, Suzuki Mulloway, Marinescale, Abalone, Deep Sea Trawlfish and niche seafoods
3. To capture highly synchronised technical and creative communications

Investigations into the toxicology of pectenotoxin 2 seco acid and 7-epi pectenotoxin 2 seco acid to aid in a health risk assessment for the consumption of shellfish contaminated with these diarrhetic shellfish toxins in Australia

Project number: 2001-258
Project Status:
Completed
Budget expenditure: $20,000.00
Principal Investigator: Glen Shaw
Organisation: University of Queensland (UQ)
Project start/end date: 28 Mar 2002 - 30 Mar 2003
Contact:
FRDC

Need

The need for the research lies in the fact that no guideline values exist for pectenotoxins in shellfish. To produce these guidelines toxicological data need to be produced and currently there is a lack of knowledge of the PTX metabolism and mechanisms of toxicity. There is currently no oral toxicology data on the PTX2- seco acids and thus their inpact on human health cannot be assessed. There have been no published works of their metabolism in mammals or humans, and their chronic effects on health are unknown. The clinical symptoms are non-specific to DSP poisoning and it is believed that cases of bacterial poisoning and DSP are mis-diagnosed due to lack of toxicological information.

The presence of pectenotoxins can impose significant economic burden on the shellfish industry. Clear toxicological data on pectenotoxins will be used to undertake a risk assessment of pectenotoxins to enable the shellfish industry and regulators to make informed decisions about the withdrawal of product from sale or closure of farms in the presence of pectenotoxins in shellfish.

Objectives

1. A comprehensive study has been undertaken in which the aims are to (i) develop a robust method for extraction, purification and quantification of pectenotoxins in shellfish, (ii) investigate the pathology caused by the pectenotoxins when ingested orally, (iii) investigate P450 metabolism of the purified PTXs with the use of microarray technology and (iv) conduct a health risk assessment for the consumption of seafood contaminated with pectenotoxins. This study will provide a greater understanding of the metabolism and mechanisms of toxicity for the PTXs and provide information useful in the clinical assessment of poisoned patients and also provide information to be used in the setting of guideline values for pectenotoxins in seafood.

Final report

Spatial arrangement of estuarine and coastal habitats and the implications for fisheries production and diversity

Project number: 2001-023
Project Status:
Completed
Budget expenditure: $414,451.00
Principal Investigator: Greg A. Skilleter
Organisation: University of Queensland (UQ)
Project start/end date: 29 Jan 2002 - 1 Mar 2008
Contact:
FRDC

Objectives

1. Develop appropriate methods for determining relationships between the spatial arrangement of estuarine habitats (habitat mosaics) and their biota including fish, crustaceans and molluscs and more sedentary epibenthos (eg comparing the fauna of isolated seagrass with that of seagrass close to mangroves).
2. Document patterns of abundance and diversity of fish and decapods in different habitat mosaics from degraded and relatively undisturbed areas of estuarine embayments, in tow latitudinally separated areas (Moreton Bay) and taking into account position within an embayment (eg western side versus eastern side versus southern side)
3. Increase our understanding of fisheries-habitat links using a combination of standardised survey methods in Queensland and make comparisons with the results obtained in Victoria using the same methods and gear types.
4. Identify the relative importance of different nearshore habitats for key fish and decapod species from recruitment to older life-history stages and compare these results with those obtained for similar species and trophic groups in Victoria.

Final report

ISBN: 978-0-646-48289-7
Author: Gregory Skilleter

The Third International Billfish Symposium

Project number: 2000-192
Project Status:
Completed
Budget expenditure: $36,704.55
Principal Investigator: John Glaister
Organisation: University of Queensland (UQ)
Project start/end date: 21 Apr 2001 - 9 Oct 2003
Contact:
FRDC

Need

The third international billfish symposium has been anticipated by the world's fisheries community since the previous two such meetings (1972,1988) were watersheds in the advancement of knowledge of these important fishes. There have been significant increases in the world's understanding of billfish species stock structure and population dynamics, and corresponding increases in concerns for some global stocks. The Australian populations of billfishes occur in waters off most States and are especially well represented in the region of the Great Barrier Reef. Much of this area has recently been declared to be of World Heritage value and magnificent arrangements for natural resources has been under considerable scrutiny from agencies and organisations not usually concerned with fisheries management. There is a need to examine the global status of our understanding of these fishes and the management regimes adopted throughout the world. Australia may benefit from such an understanding. The broadbill swordfish is in decline in parts of the northern hemisphere and remedial action is needed to protect these stocks. Again, Australia would benefit from an understanding of past and present management practices for this species.

Objectives

1. Organise the third international Billfish symposium.
2. Publish the proceedings of the symposium.
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