14 results
Environment
PROJECT NUMBER • 2018-034
PROJECT STATUS:
COMPLETED

Effects of climate change and habitat degradation on Coral Trout

Fishes are at considerable risk from changing environmental conditions because they are, for most part, unable to regulate their body temperature. Exposure to high temperatures may therefore compromise critical biological functions, resulting in reduced performance, fitness and ultimately survival....
ORGANISATION:
James Cook University (JCU)

What data how? Empowering and engaging industry to ensure the needs of contemporary fisheries data are achieved

Project number: 2014-200
Project Status:
Completed
Budget expenditure: $121,785.00
Principal Investigator: Andrew & Renae Tobin
Organisation: James Cook University (JCU)
Project start/end date: 4 Jun 2014 - 29 Jan 2016
Contact:
FRDC

Need

The proposed project responds to QFRAB Research Priority IV – Improve the relevance and quality of the data collected to underpin effective science based management of Queensland fisheries.

Traditionally fisheries data moved in a single direction, with fishers collecting data that are used by researchers and managers to manage fishers’ activities within sustainable long-term goals. Historically this was a sound system that informed the management of fisheries and enabled the development of suitable management objectives and tools (input and output controls).

A paradigm shift has occurred with contemporary fisheries data being utilised for multiple purposes other than QDAFF core business management and includes conservation objectives (EPBC Act), marine spatial planning, third party accreditation's, impact assessments and resource allocation. Not surprisingly, the quality and relevance of data collected is increasingly being questioned by all stakeholders. Given this notable shift in the interest and demands on fisheries data, it is timely that new and novel data and data collection methods are investigated, and existing systems are reviewed and improved to better meet contemporary needs. Further, increasing distrust of fisheries data by stakeholders is a significant hurdle in monitoring, assessing and managing fisheries. Concerns about the accuracy of commercial logbook data and catch estimates derived from recreational diary and phone surveys persist. Options for empowering all fishery stakeholders in the design of collection methods, data ownership and utility of data beyond core business requirements need to be explored to improve data quality and stewardship, and confidence in assessments/analyses that utilise these data.

Objectives

1. Complete an expertise-based critique of historical fisheries data collection methods evaluating data robustness, identifying data gaps and improvement areas.
2. Identify contemporary and future data needs and develop novel candidate collection methods using the Queensland line and crab fisheries as case studies.
3. From Obj 2 highlight generic data improvements transferable to other fisheries.
4. Complete a cost-benefit review of data collection options.

Final report

ISBN: 978-0-9954470-2-8
Author: Andrew Tobin

Physical oceanographic influences on Queensland reef fish and scallops

Project number: 2013-020
Project Status:
Completed
Budget expenditure: $170,000.00
Principal Investigator: Tony J. Courtney
Organisation: Department of Primary Industries (QLD)
Project start/end date: 23 Jun 2013 - 29 Mar 2015
Contact:
FRDC

Need

There is a strong need for Queensland fishery managers to obtain a better understanding of key physical oceanographic influences on target species of commercial and recreational fisheries.

Tropical cyclones have been associated with reef fish catch rates. Coral trout (Plectropomus leopardus) catch rates typically fall after a major cyclone, while those of red throat emperor (Lethrinus miniatus) rise (see “Background” above). The effects on catchability can last several years. While the exact causal mechanism is not known, it is thought to be related to water temperature.

Nutrient-rich cold water eddies, which break from the East Australian Current and move westward onto the Queensland continental shelf are likely to affect the spat settlement, growth, abundance and catch rates of saucer scallop (Amusium balloti). Understanding these relationships may lead to improved management, assessment and forecasting of catch in these fisheries, and it may also lead to improved acceptance of quantitative stock assessment results by industry.

This proposal differs from previous abiotic studies because it focuses more on offshore, oceanic influences, rather than coastal rainfall and flow data.

Objectives

1. Review recent advances in the study of physical oceanographic influences on fisheries catch data, and describe the major physical oceanographic features that are likely to influence Queensland reef fish and saucer scallops.
2. Collate Queensland’s physical oceanographic data and fisheries (i.e., reef fish and saucer scallops) data.
3. Develop stochastic population models for reef fish and saucer scallops, which can link physical oceanographic features (e.g., sea surface temperature anomalies ) to catch rates, biological parameters (e.g., growth, reproduction, natural mortality) and ecological aspects (e.g. spatial distribution).

Evaluating candidate monitoring strategies, assessment procedures and harvest control rules in the spatially complex Queensland Coral Reef fin-fish Fishery

Project number: 2011-030
Project Status:
Completed
Budget expenditure: $393,488.00
Principal Investigator: Richard Little
Organisation: CSIRO Oceans and Atmosphere Hobart
Project start/end date: 20 Oct 2011 - 2 Jun 2013
Contact:
FRDC

Need

Appropriate monitoring strategies and harvest control rules are needed to ensure sustainability and
maximum economic benefit from the coral trout stocks in the Queensland Coral Reef Fin fish Fishery
(CRFFF). This is not an easy accomplishment in a fishery that is as spatially complex as the CRFFF,
and so in order to determine whether monitoring programs and harvest control rules are worth
implementing, it is better to try several techniques on a virtual fishery before doing so in reality. This
can be done by testing alternative procedures in a Management Strategy Evaluation (MSE) framework.
The project will test in an MSE framework the effectiveness of:

1. several potential monitoring and sampling regimes of the coral trout stock, including the existing
Long Term Monitoring Program (LTMP) surveys,

2. different ways of analysing the data collected from a monitoring program, and

3. candidate harvest control rules that translate the perceived state of the fishery into a TAC.

Comparisons of alternative monitoring, analysis and harvest control rules will help DEEDI assess their
cost effectiveness. Lastly, since quota trading was introduced, industry has stressed the fact that the
economic conditions of the fishery have changed substantially, and so an update of economic data is
needed urgently for the evaluation of the above management strategies to be relevant and useful.

Objectives

1. To give scientists and managers in DEEDI their own ability to compare and contrast methods of data collection and analysis for the CRFFF, in order to aid the identification of appropriate harvest strategies.
2. To update the economic and fisheries data used to determine cost effective management strategies.
3. To identify appropriate spatial and temporal fishery independent and fishery dependent monitoring strategies, and assessment and harvest control rules that use them.

Final report

ISBN: 978-1-4863-0687-9
Author: Richard Little

FRDC-DCCEE: effects of climate change on reproduction, larval development, and population growth of coral trout (Plectropomus spp.)

Project number: 2010-554
Project Status:
Completed
Budget expenditure: $400,000.00
Principal Investigator: Morgan S. Pratchett
Organisation: James Cook University (JCU)
Project start/end date: 23 Dec 2010 - 29 Jun 2013
Contact:
FRDC

Need

This research is critical to the National Climate Change Adaptation Research Plan, and addresses several of the information needs and research gaps identified under sectoral sub-themes of i) Aquaculture, ii) Commercial and recreational fishing, iii) Conservation management, and iv) Tourism and recreational uses.

Specifically this study:
i) addresses the severity of likely impacts of climate change on coral trout, which are the No. 1
commercial and recreational fisheries species caught within coral reef waters, and account for 41% of
wild-caught fish in Queensland waters;

ii) will predict spatial and temporal changes in the fisheries production of coral trout populations across the Great Barrier Reef, which is critical for spatial zoning of fisheries closures and assessing the immediacy of required intervention;

iii) identifies environmental tolerances of coral trout, especially during highly sensitive larval stages,
which impacts natural recruitment of wild populations, and grow-out of juveniles in open aquaculture
systems, which is necessary for further development of coral trout production;

iv) explores ontogenetic changes in the habitat requirements of newly-settled, juvenile and sub-adult
coral trout, thought to rely on habitat structure provided by good coral growth. If so, this will help to
establish coral reef habitats of high conservation priority, and

v) significantly advances understanding of climate impacts on coral reef fishes, which are critical for both fisheries and tourism industries on the Great Barrier Reef, currently worth in excess of $6 billion to the Australian economy.

Objectives

1. To assess sensitivities of coral trout to climate-related changes in temperature and seawater chemistry, during fertilisation and early larval development
2. To test the effects of increasing temperature and ocean acidification on growth, condition, behaviour and survivorship of early post-settlment coral trout
3. To test for spatial variation in sensitivities to increasing temperatures for coral trout in three distinct sectors along the Great Barrier Reef
4. To measure coral-dependence at different ontogenetic stages, to test whether coral trout will be adversely affected by climate-induced bleaching and coral loss

Development of an individual transferable catch quota model for the Coral Reef Fin Fish Fishery of the Great Barrier Reef

Project number: 2004-030
Project Status:
Completed
Budget expenditure: $476,940.00
Principal Investigator: Richard Little
Organisation: James Cook University (JCU)
Project start/end date: 14 Jan 2005 - 29 Oct 2008
Contact:
FRDC

Need

One of the major research priorities of QFIRAC, REEFMAC, QFS, GBRMPA, and other fisheries' stakeholders of the GBR concerns the need to develop innovative approaches for determining the sustainability of the fisheries for the exploited reef fish species, particularly the major target species of the GBR Coral Reef Fin Fish Fishery, common coral trout and red throat emperor. This need has become even more pronounced with the recent release of the management plan for the fishery, which is largely dependent upon an Individual Transferable catch Quota (ITQ) system and the impending GBRMPA Representative Areas Program (RAP). A model involving complex effort dynamics associated with an extensive system of "no-take" areas and a significant recreational harvest (e.g., unlike the SE Trawl Fishery) that provides a framework for setting appropriate Total Allowable Catches (TACs) and evaluating their impacts has yet to be developed.

This proposal, therefore, arose in response to major concerns for the sustainability of the GBR Coral Reef Fin Fish Fishery. It addresses directly QFIRAC's key R&D priorities in sustainability assessments by developing innovative assessment methodologies, sustainability indicators for target species in commercial fisheries, and using a Management Strategy Evaluation (MSE) approach. The "standard" approach to providing management advice for fisheries managed using ITQs involves, for each target species, fitting a population dynamics model to data collected for large geographic areas and calculating catch limits according to pre-specific decision rules (such as F0.1). However, this approach is likely to fail to achieve the management objectives for the GBR Coral Reef Fin Fish Fishery because it ignores spatial heterogeneity in population structure and the multi-species and multi-sector nature of the fishery. Also, the data typically required to apply these methods is not available for the GBR Coral Reef Fin Fish Fishery. In addition, little is known about the bioeconomic impacts and sophisticated effort dynamics associated with an ITQ managed multi-species, multi-sector fishery such as the GBR Coral Reef Fin Fish Fishery.

Consequently, we propose to extend the MSE framework developed as part of the CRC Reef Effects of Line Fishing (ELF) Project and other related FRDC funded projects (1997-124, 1998-131, 2001-020). Results from this project will inform stakeholders and decision makers about the bioeconomic trade-offs associated with a variety of alternative rules for setting TACs. This is exactly the type of information required as the basis for the selection of monitoring strategies and decision rules. This project, therefore, will provide a management tool by which appropriate TACs can be evaluated given alternate harvest strategies related to effort displacement caused by the RAP and the significant recreational harvest.

Objectives

1. To extend the existing MSE framework for the GBR Coral Reef Fin Fish Fishery so that management controls evaluated can include catch limits implemented as Individual Transferable Quotas.
2. To evaluate the likely effects on the sustainability of common coral trout and red throat emperor of regional shifts in catch distributions in response to spatial closures and potential displacement of fishing effort associated with the GBRMPA Representative Areas Program.
3. To evaluate alternative management strategies for common coral trout and red throat emperor in the Coral Reef Fin Fish Fishery of the Great Barrier Reef in terms of the trade-offs among the objectives of the commercial, recreational and charter fisheries.

Final report

ISBN: 9.78E+12
Author: Richard Little

National Strategy for the Survival of Released Line Caught Fish: investigating survival of fish released in Australia’s tropical and subtropical line fisheries

Project number: 2003-019
Project Status:
Completed
Budget expenditure: $674,340.00
Principal Investigator: Ian Brown
Organisation: James Cook University (JCU)
Project start/end date: 29 Jun 2003 - 28 Feb 2008
Contact:
FRDC

Need

The report by McLeay et al. (2002) (“National strategy for the survival of line-caught fish: a review of research and fishery information”) summarises the need for this research as follows:

“The commercial and recreational line fisheries are the most highly participatory of all Australia’s fisheries. They are managed by a complex array of regulations, including size and catch limits, which create a high potential for captured fish to be released. The growing interest of recreational and charter fishers in catch-and-release practices has also increased release rates of line-caught fish. The susceptibility of line-caught fish to post-release mortality (PRM) is largely unknown, and is not taken into account in most current stock assessments”.

Perhaps half of the fish caught by line in Australia are released, for a variety of reasons including minimum legal sizes, bag limits, catch-release philosophy etc. However, we have little idea of how many of these die as a result of hook damage, inappropriate handling, barotrauma or capture stress, nor what effect this source of ‘cryptic’ mortality will have on the long-term sustainability of the various fisheries.

While there is good information on release rates in the recreational line fishing sector there is also a need to test the supposition that the commercial sector catches few undersized fish and also establish any differences between the general recreational community and the charter sector.

To more realistically appreciate the full effect of line fishing on the various species, the released catch needs to be described and quantified, and an attempt made to estimate post-release survival (PRS) rates. Alternative capture methods (hook designs) need to be tested, to determine whether a change in apparatus (via regulation or a Code of Practice) could reduce the catch of undersized fish. Pre-release handling and barotrauma relief procedures need to be evaluated to determine whether any changes may increase survival of fish returned to the water.

Objectives

1. To quantify the effects of hook type, hooking damage, barotrauma and barotrauma relief procedures on the short-term post-release survival (PRS) of key tropical and sub-tropical line-caught fish species.
2. To quantify the effects of hook type, hooking damage, barotrauma and barotrauma relief procedures on the long-term post-release survival (PRS) of key tropical and sub-tropical line-caught fish species.
3. To develop and extend ‘best practice’ handling procedures applicable to the recreational, commercial and charterboat sectors in Queensland, the Northern Territory and Western Australia.

Final report

ISBN: 978 0 7345 0393 0
Author: Ian Brown
Final Report • 2011-11-24
2003-019-DLD.pdf

Summary

Experiments were conducted in northern, central and southern Queensland to investigate the effects of hook design and size on the incidence of hooking injury, and the effects of a number of factors, including barotrauma-treatment method, on post-release survival rates of a suite of key reef-associated demersal fish species of particular importance to Queensland’s reef line fishery. The key species examined were common coral trout (Plectropomus leopardus), redthroat emperor (Lethrinus miniatus), crimson snapper (Lutjanus erythropterus), saddletail snapper (Lutjanus malabaricus), red emperor (Lutjanus sebae) and spangled emperor (Lethrinus nebulosus).

The work comprised four components:
(i) Analysis of existing datasets in terms of discarding/release rates in the commercial, recreational and charter sectors and estimation of barotrauma treatment effects;
(ii) Field trials to determine experimentally the effects of three hook patterns (J-hooks, offset circles and non-offset circles) and two sizes (small: 4/0 or 5/0, and large: 8/0) on hooking injury, location of hook lodgment and catch rate;
(iii) Field experiments using specially-developed vertical floating enclosures to test short-term (3-day) survival rates of fish treated to relieve barotrauma by venting or shotline releasing;
(iv) A community-based tag-release-recapture experiment involving recreational anglers to test the effects of barotrauma treatment and other covariates on long-term (months to years) post-release survival.

Discarding rates of some species have increased since 1997 largely as a result of increases in legislated minimum legal size limits and the introduction of maximum size limits. In December 2003 the minimum legal size (MLS) limit for red emperor was raised significantly, from 45 cm (TL) to 55 cm. Concurrent increases in MLS of bluespot coral trout, redthroat emperor and spangled emperor did not result in an observable change in discard rate. By 2005 the reported recreational discarding rates for coral trout, redthroat emperor, spangled emperor and saddletail snapper ranged between 42% and 55%, but for crimson snapper the rate was 69%, and for red emperor it was 83%. Between 1989 and 2003 some 300–620 t of coral trout and 33–95 t of redthroat emperor were discarded annually by the commercial reef line fishery on the GBR. Modelling of potential high-grading after the introduction of a (competitive) total allowable commercial catch for coral trout indicated that discarding of this species could increase to as much as 3,900 t. Spatial (but not temporal) differences in discarding rates were significant, and modelling indicated a potential for large increases in discarding rates and subsequent cryptic mortality as a result of changes in management arrangements.

The effects of hook pattern varied between species, with no consistent significant trends. Across all species only a relatively small proportion of fish (< 4%) were deep-hooked (in the throat or gut). Small hooks (5/0 circle and 4/0 J-hooks) were more likely to lodge in the lip or mouth than large hooks, although the effect was weak. Crimson snapper were significantly less prone to damage from non-offset circle hooks than either of the other patterns, but the opposite trend occurred with saddletail snapper. There was also a weak tendency for coral trout to sustain more injuries when captured on J-hooks or offset circle hooks than on non-offset circles. Hook size showed a more consistent trend, with large (8/0) circle or J-hooks being more frequently associated with injury than small hooks in all species, but this was statistically significant only in coral trout and blackblotch emperor. 

Our controlled short-term (3-day) field experiments revealed that hook location was a major determinant of short-term survival in coral trout, crimson snapper and saddletail snapper. Even when the hooks were left in place according to best practice procedures, survival rates among deep-hooked fish were considerably reduced compared to those hooked in the mouth or lip. The modelled survival rates of shallow and deep-hooked fish repectively were as follows: coral trout 81 and 50%, redthroat emperor 86 and 59%, crimson snapper 96 and 35%, and saddletail snapper 73 and 38%. This represents an overall reduction across species in survival rate of around 50% as a result of deep hooking, even when the hooks were left in place. The results of our hooking damage experiment showed that the incidence of deep hooking was generally low across the species examined (< 4%), so that the predicted added mortality due to deep hooking would be in the order of 0.04 × 0.50, or 2%. However this figure probably underestimates the actual value, as not all anglers are prepared to cut their hooks off if the hooks have become lodged in the gullet or gut. It is also likely that the higher level of angling skill among researchers conducting the hooking trials accounted for a lower incidence of deep-hooking than might be expected across the general angling community. 

Keywords: Released fish, Hook design, hooking injury, barotrauma, post-release survival, demersal fish species, reef line fishery, Coral Trout (Plectropomus leopardus), Redthroat Emperor (Lethrinus miniatus), Crimson Snapper (Lutjanus erythropterus), Saddletail Snapper (Lutjanus malabaricus), Red Emperor (Lutjanus sebae) and Spangled Emperor (Lethrinus nebulosus)

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