Exploring and improving the genetics of resistance to abalone viral ganglioneuritis (AVG)

Project number: 2024-030
Project Status:
Current
Budget expenditure: $247,099.00
Principal Investigator: Nicholas A. Robinson
Organisation: Deakin University Geelong Waurn Ponds Campus
Project start/end date: 14 Nov 2024 - 15 Jun 2028
Contact:
FRDC
SPECIES

Need

The heritability of resistance to AVG in Australian Haliotids remains unexplored, but resistance to other viral diseases is heritable in fish and shellfish, and large scope for genetic improvement to buffer farmed populations against the effects of viral diseases has been demonstrated in other species [2-4]. Challenge tests performed on New Zealand paua (Haliotis iris) and Japanese disc abalone (H. discus) indicate complete immunity to AVG [5, 6]. More recently, genetic signatures of rapid selection in AVG virus affecting Australian Haliotid populations have been found, and some genes have been implicated that may have a large effect on the trait [7]. Consequently, there is the possibility of harnessing AVG resistant genotypes for the genetic improvement of farmed Australian abalone, although further work is needed to validate the presence of resistance and the heritability of the trait. Genomic selection is now being implemented by the abalone industry for improving growth rate (PI's work with Yumbah), and genomic selection has proven to be especially advantageous in instances when trait heritability is low and the trait is affected by many genes of small to moderate size effect on resistance (e.g. for white spot syndrome virus resistance in white-legged shrimp [8]). In instances in other species where there are genes of very large effect on the trait (eg. for infectious pancreatic necrosis in Atlantic salmon [9-12]) marker assisted selection has proven to be highly effective [13-15]. We have designed a single experiment that will allow us to investigate the possibility for these approaches and evaluate how effective one round of selection for AVG resistance could be.

Objectives

1. To perform an AVG challenge test in La Trobe’s biosecure lab collecting survival data from offspring (G0) of multiple greenlip and/or blacklip families
2. To genotype all offspring challenge tested, and a group of unchallenged offspring (candidates for breeding genotyped by the farms), using approx. 29,000 single nuclei polymorphisms for genomic predictions and estimation of viral load (in tentacle)
3. For 20 randomly selected survivors and 20 randomly selected dying abalone, to dissect and test the ganglion neurone to quantify load of the virus for comparison to ddRADseq quantification of load in the tentacle.
4. To characterise the genetics of resistance to AVG (heritability and correlation to growth rate)
5. To search for loci (QTL) in the genome and underlying genes associated with resistance. Check if genes underlying QTL correspond with signatures of selection found in wild surviving AVG infected populations [7]
6. To predict the accuracy and expected genetic gain achievable from genomic selection or marker assisted selection
7. To provide data to estimate the genomic breeding value of G0 candidates and suggest the best individuals, and mate pair combinations, for mating (marker assisted and/or genomic selection)
8. To predict the expected response in terms of improved AVG resistance in G1 from the matings of G0 performed on farm
9. To check genetic associations hold in blacklip and hybrid abalone (if these were not tested in phase 1)
10. To evaluate the realised response to marker and/or genomic selection for AVG resistance in the G1 offspring

Future-proofing Lactococcus garvieae vaccines for Australian farmed trout in a warming climate

Project number: 2022-093
Project Status:
Current
Budget expenditure: $0.00
Principal Investigator: Andrew C. Barnes
Organisation: University of Queensland (UQ)
Project start/end date: 25 May 2023 - 28 Jan 2027
Contact:
FRDC
SPECIES

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence

Assess the future needs of Australia's aquatic animal disease diagnostic system

Project number: 2023-006
Project Status:
Current
Budget expenditure: $342,866.00
Principal Investigator: Francisca Samsing
Organisation: University of Sydney (USYD)
Project start/end date: 1 Feb 2024 - 30 Oct 2025
Contact:
FRDC

Need

Global and domestic trends in aquatic animal production and trade indicate that Australia will increasingly require agile, strong, and modern diagnostic systems to effectively manage disease risks (AQUAPLAN, 2022). To strengthen and support the aquatic animal diagnostic network we need to thoroughly understand future industry needs – which are rapidly evolving.

This project seeks to forecast diagnostic needs and understand the changing demands for aquatic animal health diagnostic services in Australia. For example, activities such as the safe translocation of stock between states, the establishment of specific pathogen free (SPF) broodstock, point-of-care-testing, emerging production diseases and increasing requirements from trading partners, will all require robust diagnostic technologies that are reliable, fit-for-purpose and accessible within the diagnostic network.

To forecast diagnostic requirements, we propose the following key activities, including a workshop (if required). The workshop is a STOP-GO point in our project and the decision to go ahead will be established in consultation with a project Steering Committee. The main activities in this project include:

1. Establishment of a Steering Committee and Terms of Reference to assist with milestone reporting and project oversight.

2. Generation of a map of the current operators and regulators of the diagnostic network for aquatic animal health in Australia.

3. Stakeholder consultation. This will be conducted incrementally through key informant interviews with the following stakeholder groups:

I. Stage 1. Members of SCAAH representing each State and Territory to identity their future needs, and further key informants.
II. Stage 2A. Diagnostic service providers (Government and private veterinary laboratories identified by SCAAH) to provide insight into current diagnostic services capabilities/capacity and identify future needs.
III. Stage 2B. End-users of the diagnostic network and regulators (identified by SCAAH and the research team) to provide insight into current diagnostic needs and challenges and identify future needs.

4. Scoping review of existing and novel diagnostic technologies relevant to aquatic animal health (to be conducted in parallel to the stakeholder consultation process).

5. A workshop (STOP-GO point) with key stakeholders to discuss specific needs identified in Activity 3

6. A Final Report presenting a roadmap to guide the implementation and adoption of future diagnostic needs.

Our final report and roadmap will inform priority areas for investment in the diagnostic system and provide advice to regulators. Areas for investment could include additional research and development, and upskilling of veterinary practitioners and laboratory diagnosticians. A schematic diagram of the project proposal is presented in the Appendix.

As per AQUAPLAN’s vision, this project is an exceptional opportunity to bring together a network of collaborators across multiple disciplines and sectors to support sustainable industry growth.

Objectives

1. Undertake stakeholder consultation to inform future demands on the diagnostic system over the next 5 to 10 years considering the current diagnostic landscape, and the emergence of new diagnostic needs and technologies.

Minor use permit for Chloramine-T in marine and freshwater finfish

Project number: 2022-135
Project Status:
Current
Budget expenditure: $75,000.00
Principal Investigator: Marty R. Deveney
Organisation: University of Adelaide
Project start/end date: 27 Jul 2023 - 30 Aug 2024
Contact:
FRDC

Need

Veterinary chemicals are important tools in primary production systems. When used correctly, they play a valuable role in ensuring animal welfare and maximising the quality and yield of primary produce (economic sustainability). The use of veterinary chemicals as part of disease management in aquaculture also reduces the risk of disease spread to adjacent wild stocks (ecological sustainability). Aquaculture is a comparatively young (i.e. decades) primary industry, farming new (and often non-domesticated) species compared to terrestrial animal production (where most species have been domesticated for hundreds or thousands of years). Consequently, there is limited biological knowledge of aquaculture species (e.g. health, physiology and disease) where novel aquatic disease outbreaks are common, often requiring use of veterinary chemicals that are not registered for use in aquatic environments. Thus there is also a lack of information on the efficacy, safety and environmental effects of veterinary medicines. Furthermore, due to the relatively small size of Australian aquaculture industry sectors, there is limited interest from pharmaceutical companies for investment in product registration due to low economic return on investment.

We will collate available data and obtain new data to satisfy identified gaps to satisfy the requirements of the APVMA Minor Use Permit application.

Objectives

1. Obtain data to satisfy identified gaps, and collate available data, to satisfy specified requirements of a minor use permit application for the use of Chloramine-T (N-chloro-4-methylbenzenesulfonamide sodium salt) to treat bacterial or parasite infections in marine and freshwater finfish.
2. Compile and submit a minor use permit application to the Australian Pesticides and Veterinary Medicines Authority (APVMA).

Development of an Experimental Aquaculture Facility (EAF) specific Amoebic Gill Disease (AGD) challenge model that can reliably evaluate treatment interventions to support industry focused AGD studies

Project number: 2023-071
Project Status:
Current
Budget expenditure: $250,000.00
Principal Investigator: Mark B. Adams
Organisation: Institute for Marine and Antarctic Studies (IMAS) Hobart
Project start/end date: 30 Sep 2023 - 29 Jun 2024
Contact:
FRDC

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence

Minor use permit for trimethoprim-sulfadiazine in commercially cultured marine and freshwater finfish

Project number: 2022-130
Project Status:
Completed
Budget expenditure: $73,700.00
Principal Investigator: Paul Hardy-Smith
Organisation: Panaquatic Health Solutions Pty Ltd
Project start/end date: 20 Jul 2023 - 30 Jul 2024
Contact:
FRDC

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence

Minor use permit for oxytetracycline in marine and freshwater crustaceans

Project number: 2021-101
Project Status:
Current
Budget expenditure: $75,000.00
Principal Investigator: Marty R. Deveney
Organisation: University of Adelaide
Project start/end date: 30 Apr 2023 - 30 May 2024
Contact:
FRDC

Need

This project will develop a Minor Use Permit application for oxytetracycline for use in crustacean aquaculture comprising:
- a human health assessment focusing on worker exposure to OTC through mixing and administration
- an environment assessment comprising use of existing trigger values with estimated release volumes of chemicals to understand environmental safety and to develop environmental release conditions
- an efficacy and safety summary based on published information
Assembly of these and all other relevant data into a Minor Use Permit application and submission to APVMA.

Objectives

1. Obtain a minor use permit for oxytetracycline use in crustacean aquaculture
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