63 results

Stock assessment models with graphical user interfaces for key South Australian marine finfish stocks

Project number: 1999-145
Project Status:
Completed
Budget expenditure: $287,738.00
Principal Investigator: Richard McGarvey
Organisation: SARDI Food Safety and Innovation
Project start/end date: 24 Mar 2000 - 28 May 2004
Contact:
FRDC

Need

Industry, in consultation with PIRSA, FRDC and the SA FRAB, specified five-year research priority needs in, “South Australian Fisheries and Aquaculture Five Year Research and Development Strategy”. For Marine Scalefish, priority item 2 (after allocation issues of User Access) was “Stocks Assessment (A): There is an urgent requirement to identify further biological information relating to key species which will lead to better total management of the fishery”, with the first Key Requirement being to “more accurately assess stocks levels of key species”.

Data for optimal and sustainable management, to be used under the restructured management regime, are now available. Needed are cost-effective analysis tools for converting these data to a form that managers and the MSF FMC can apply directly to management decision making.

Requested are yearly estimates of stock performance indicators, recruitment, exploitation rate, and stock biomass, for the key species. This need is being addressed for King George whiting in an FRDC project. Models for performance indicators of other species, notably snapper and garfish are now required.

Cost effective delivery of indicators to fishery managers and the Marine Scalefish Fishery Management Committee (MSF FMC) will be attained by providing the research biologists with a stock assessment model estimation software for analysis of fisheries data. This software should meet three criteria: (1) Use the best available methods of estimating stock management indices, (2) provide confidence bounds for all indicators estimated, and (3) be presented in a user-friendly interface, allowing its use, in conjunction with modellers, by the research biologists who gather the data and write yearly stock assessment documents.

Objectives

1. To build a model estimation software structure, which will use (1) monthly catch and effort data, (2) aged catch samples, (3) life history information, and when available, (4) recruitment indices, and (5) length-frequency samples to estimate yearly performance indicators, accessed through a graphical user interface, for use in marine scalefish stocks.
2. To build two models for key marine scalefish species in South Australian waters for use in yearly stock assessment.
3. To transger model outcomes, notably yearly estimated biological performance indicators, to the Marine Scalefish Fishery Management Committee.

Final report

ISBN: 0-7308-5303-9
Author: Richard McGarvey

Migratory dynamics and recruitment of snapper (Pagrus auratus) in Victorian Waters

Project number: 1999-134
Project Status:
Completed
Budget expenditure: $513,978.00
Principal Investigator: Gregory Jenkins
Organisation: Agriculture Victoria
Project start/end date: 12 Jul 1999 - 30 Jul 2008
Contact:
FRDC
SPECIES

Need

Over the past decade there has been a major decline in the commercial and receational snapper fishery in Port Phillip Bay, the commercial catch declining from 200 t to 40 t. At present, the status of the Port Phillip Bay snapper fishery is in doubt because the relationship between the Port Phillip fishery and the western stock as a whole is unknown. Whether catch declines in Port Phillip Bay are a result of local factors such as overfishing or local recruitment variability, or whether they are the result of change in the migratory dynamics of snapper between Port Phillip and offshore waters, will not be known without new research that is novel in its approach. At present we cannot be certain whether the apparent decline snapper in Port Phillip Bay mirrors a decline in the entire western stock. Imposing management controls is difficult in the face of such uncertainty, and therefore the snapper fishery in Port Phillip is under threat. This project, endorsed by the recent workshop on snapper research in Victoria, aims to clarify some aspects of the relationship between snapper in Port Phillip Bay and the rest of the western stock. Otolith microchemistry is a novel technique that may prove very powerful in answering questions about the origin and migration patterns of snapper in the Port Phillip. In addition, pre-recruit sampling across the Victorian coast will indicate whether high recruitment variability observed in Port Phillip is reflected by the entire stock.

Objectives

1. Determine whether high annual variability in the abundance of pre-recruit snapper in Port Phillip Bay is reflected by the entire western stock
2. Determine the importance of spawning of snapper within Port Phillip Bay to the western stock as a whole.
3. Determine the movement patterns of snapper between Port Phillip Bay and offshore waters and whether they are changing over time
4. To determine the proportion of the snapper population on the open coast that originates from Port Phiilip Bay and how this changes with age.
5. To determine the proportion of the snapper population in Port Philip Bay that originates from areas outside the bay and how this changes with age.

Final report

ISBN: 978-1-74199-078-2
Author: Gregory Jenkins
People

Health problems of the Western Australian dhufish (Glaucosoma hebraicum)

Project number: 1998-328
Project Status:
Completed
Budget expenditure: $81,405.00
Principal Investigator: Shane Raidal
Organisation: Murdoch University
Project start/end date: 28 Jun 1998 - 24 May 2002
Contact:
FRDC

Need

The two current FRDC supported projects investigating the WA dhufish conducted at the Fremantle Maritime Center and the School of Biological Sciences at Murdoch University have identified various fish health issues for the species. In some cases these fish health issues will have implications for wild stocks of the WA dhufish and in others they may compromise the ability to commercialise the culture of the species.

Whilst health problems identified so far have been controlled to some extent in the hatchery, the ability to control these in a commercial grow-out operation will be very difficult unless a thorough understanding of the life history of the infesting organisms and the relationship to their host is known. Similarly, improved knowledge of the causal mechanisms of exophthalmia syndrome are required to permit prevention and treatment measures.

Staff at the Fremantle Maritime Centre, the Fisheries Department of WA, or the School of Biological Sciences at Murdoch University do not have the resources to quantify disease causal agents and preventative measures for the WA dhufish.

A recent report of the National Task Force on Imported Fish and Fish products (the Fish Task Force report) noted that there is a serious shortage of aquatic animal health specialists in Australia. The report identified a need to provide a continuum of expertise in this field to support developing aquaculture industries. A recent response to this issue from the Office of the Australian Chief Veterinary Officer (OCVO) emphasises that there is a considerable need for more veterinary training in fish health. This includes the development of standard diagnostic techniques for diseases of aquatic animals and the development of contingency plans for the management of aquatic disease and pest outbreaks. The proposed project addresses these issues.

Objectives

1. To understand the pathogenesis of exophthalmia syndrome in Western Australian dhufish
2. Control of significant health problems which occur in WA dhufish

Final report

ISBN: 0-86905-817-7
Author: Shane Raidal

Assessment of the impacts associated with the harvesting of marine benthic invertebrates for use as bait by recreational anglers

Project number: 1998-224
Project Status:
Completed
Budget expenditure: $346,425.89
Principal Investigator: Greg A. Skilleter
Organisation: University of Queensland (UQ)
Project start/end date: 10 Aug 1998 - 29 Jun 2004
Contact:
FRDC

Need

Coastal areas of Australia, especially those close to urban areas, are under increasing pressure from industrial and tourism developments, and the associated infrastructure to support them. These shallow-water coastal and estuarine areas will also continue to be the focus of attention by the recreational and commercial fishing sectors. An understanding of the impacts of damage to key intertidal habitats will allow managers to minimise the adverse impacts and developmental degradation on Australia's fisheries resources.

There is currently no detailed information available on the specific effects of loss or damage to intertidal estuarine habitats on the animal assemblages that utilise these habitats, despite the recognised importance of the habitats and the benthic invertebrates to fisheries resources. Studies which have examined the effects of damage to subtidal habitats have shown important links to fisheries utilising these habitats (e.g. Sainsbury et al., 1993). Similar studies should be a priority for critical intertidal estuarine habitats. Although this project focuses on damage to intertidal habitats caused by bait-harvesting, the results of this work will be applicable to other sources of damage to these habitats, providing an important database establishing causal relationships between effects on the physical structure of the habitat and impacts on the associated animals.

Objectives

1. Assess the ecological impacts of commercial and recreational harvesting of yabbies and bloodworms on other components of the ecosystem.
2. Assess the impacts of bait-harvesting activities on the sustainability of populations of yabbies (Trypaea australiensis) and bloodworms (Marphysa sp.).
3. Develop a population assessment technique for yabbies and bloodworms.
4. Determine levels of recruitment of these species and assess whether harvesting affects recruitment.
5. Obtain estimates of the recreational harvest of these species.

Evaluation of recreational fishery management controls of commercially important scalefish species

Project number: 1998-146
Project Status:
Completed
Budget expenditure: $104,000.01
Principal Investigator: Simon Conron
Organisation: Agriculture Victoria
Project start/end date: 21 Jun 1998 - 18 Mar 2004
Contact:
FRDC

Need

In order to provide sound advice on the merits of alternative measures for recreational fisheries management, it is necessary to determine the effectiveness of each management option availible. In particular there is a need to analyse the available recreational data to quantify and model the relative impact of seasonal and area closures, size limits and bag limits for major target species.

While recreational fishery surveys have been conducted in Victorian bays and inlets throughout the 1980's and 1990s, the data collected have mostly been used to estimate catch and effort. Further analysis of the available data would provide more information to address fundamental management issues such as the appropriateness of size limits, bag limits and seasonal or area closures in different scalefish fisheries managed by Victoria (bays and inlets and coastal waters). Modeling the impacts of these management tools under various fishery and management scenarios will allow Victorian and other state management agencies to make more informed decisions regarding appropiate tools for managing key recreational scalefish fisheries under their jurisdiction.

Objectives

1. To develop methods to evaluate the impact of alternative management controls on recreational fisheries.
2. To compare the effectiveness of alternative management tools - seasonal and area closures, size limits and bag limits - in controlling recreational fishing pressure on snapper, King George whiting and black bream stocks.

Final report

ISBN: 1 74146 015 8
Author: Simon Conron
Final Report • 2004-03-04 • 390.97 KB
1998-146-DLD.pdf

Summary

There are increasing demands for Australian fisheries management agencies to demonstrate that fisheries under their jurisdiction are being managed in accordance with the principles of ecologically sustainable development (ESD).  The decision-making processes of the ESD management framework requires, amongst other things, the establishment of specific and measurable objectives and performance indicators for the management of fisheries, both commercial and recreational.  This study focused on the development of methods to assist in evaluating the effectiveness of alternative management controls in addressing these objectives.  Methods were developed for conducting a priori and a posteriori evaluations of the effectiveness of alternative legal minimum length (LML) and daily bag limit (DBL) management options in controlling fishing mortality (F) in marine recreational scale fisheries. These methods were then illustrated using case studies involving three southern Australian scalefish species: black bream, snapper and King George whiting.  A predictive age-structured model was developed to assess the likely impacts of LML changes using the Sydenham Inlet and Gippsland Lakes black bream fisheries as examples.  A model for assessing the likely effects of alternative DBLs was illustrated using information from the snapper and King George whiting fisheries in Port Phillip Bay and Western Port bay, and the black bream recreational fishery in the Gippsland Lakes.  The effects of three LML changes previously applied to the black bream fishery in the Gippsland Lakes were also assessed. 

Coastal stocks of fish: from which estuaries are most adults derived?

Project number: 1998-139
Project Status:
Completed
Budget expenditure: $142,684.00
Principal Investigator: Bronwyn M. Gillanders
Organisation: University of Sydney (USYD)
Project start/end date: 20 Jun 1998 - 12 Jun 2002
Contact:
FRDC
SPECIES

Need

The origins of many stocks of fish are unknown. As juveniles, many fish are found in estuarine regions. After a period in these habitats they may leave estuaries for coastal reefs and shelf waters. Degradation of habitats within estuaries (from pollution, land reclamation, marinas etc) and death of fish as by-catch in commercial and recreational fishing may affect abundances of adults on coastal reefs. The contribution of each estuary to total stock size in coastal waters is unknown. It is difficult to determine which estuary adult fish may have come from using conventional tagging methods, because of the small size of fish in estuaries. Alternative methods for determining the origins of adult fish are needed.

Molecular genetics provides one possibility, but these methods are in their infancy. An alternative method may utilise chemical elements in bones to show origins of fish. Chemical analyses have proven useful in distinguishing between periods of freshwater and marine residence within individual fish (e.g. Kalish 1990) and have also been used to distinguish stocks or sub-populations within marine species (e.g. Edmonds et al. 1989, 1991, 1992, 1995). Recently, we (Gillanders and Kingsford 1996) have used chemical analyses of ear bones to distinguish recruits that settled to seagrass from those that settled to reef habitats. We then analysed the centre region of adult ear bones to determine the origin (estuary or reef) of adult fish showing that this approach is possible.

Many studies have documented important estuarine "nursery" areas in terms of numbers of fish, but if few fishes from these areas reach coastal reefs, such habitats may be relatively unimportant to sustaining populations of adults. The research will focus on snapper (Pagrus auratus) because it is the most important species (in terms of production) that has individuals leaving estuaries for coastal reefs or shelf waters (Bell and Worthington 1993).

Objectives

1. To solve a pressing problem for the fishery by determining what proportion of the commercial catch is from different estuaries.
2. To use methods being developed on juvenile fish to establish a chemical "fingerprint" for each estuary so that in future years the proportion of adults from each estuary can be determined.

Final report

ISBN: 0-86396-690-X
Author: Bronwyn Gillanders
Final Report • 2002-04-12 • 265.80 KB
1998-139-DLD.pdf

Summary

The origins of many stocks of fish are unknown.  As juveniles, many fish are found in estuarine regions.  After a period in these habitats they may leave estuaries for coastal reefs and shelf waters where they may be commercially fished.  Currently, we do not know the proportion of individuals in harvested populations that may have spent time in different estuaries as juveniles and whether one or a few estuaries are making substantial contributions to maintaining local stocks.  This study used elemental chemistry of ear bones (otoliths) of fish to determine natal or nursery estuaries of adult fish.

Mesh selectivity in the NSW demersal trap fishery

Project number: 1998-138
Project Status:
Completed
Budget expenditure: $188,040.05
Principal Investigator: Doug Ferrell
Organisation: Department of Primary Industries and Regional Development (NSW)
Project start/end date: 28 Jun 1998 - 12 Jun 2002
Contact:
FRDC

Need

Reduction of by-catch has been an active area for research in Australia and around the world. The initial focus for research and management has been demersal trawl fishing, where the perception of waste and potential impact has been the greatest. However, the reasons for seeking to reduce unwanted catch apply to all fisheries, including those using demersal traps.

Demersal fish traps in NSW must be covered with mesh no smaller than 50 mm, and a galvanised hexagonal fencing wire is the most common material. However, many fishers use larger mesh and both 50 X 75 mm and 75 mm hexagonal mesh are in use. Those using and advocating larger mesh have done so to reduce the catch of undersize snapper and other small fish and to decrease sorting times. Other trappers are concerned about the effect of larger mesh dimensions on the catch of valuable species such as wrasses, sweep or bream which all have no minimum legal length (MLL) or have an MLL smaller than snapper.

An understanding of the differences in selectivity of different sizes of mesh on the species caught in fish traps will have a number of uses. This information is essential to determine the cost and benefit to fishers of changing mesh sizes. The selection probabilities for existing meshes can also be used to improve the assessments using age and length composition collected for snapper and bream in NSW. This is particularly important for snapper, where a very large proportion of the fishery is caught close to the MLL. Finally, because wire mesh can be made in a diversity of shapes and sizes, it may be possible to achieve desirable changes in selectivity for some species while not changing selectivity patterns for others.

Objectives

1. Document throughout NSW, the current usage patterns of the various mesh types used in demersal fish traps.
2. Describe the size composition of retained and returned catch for species common in the NSW trap fishery for all mesh types as they are currently used.
3. Describe size composition of retained and returned catch for commercially available mesh and wire products in areas where they are not currently fished.
4. Determine the likely utility of possible mesh configurations not currently in use.

Final report

Author: Doug Ferrell
Final Report • 2002-04-30 • 1.76 MB
1998-138-DLD.pdf

Summary

The New South Wales demersal trap fishery is a complex, multi-species fishery.  The most valuable species in the fishery is snapper, worth approximately half the value of the fishery, with bream, rubberlip morwong, ocean leatherjacket, silver trevally, sweep and pigfish accounting for a further 36% of the fishery.  Current regulations specify that traps must be covered with mesh having a measurement from one plain wire to the opposite plain wire of not less than 50 mm, and a 50 mm hexagonal fencing wire is the most commonly used trap mesh.  We know that 50 mm hexagonal wire mesh retains undersized snapper and some fishers advocate using panels of 50 x 75 mm welded mesh in their traps to reduce the catch of small, unwanted fish.  We needed knowledge concerning discarding of fish in the trap fishery, because it was apparent that the mesh selectivity of the currently used 50 mm hexagonal wire is inappropriate for snapper, and probably also for many other species captured in traps.

Development of an artificial neural network for automated age estimation

Project number: 1998-105
Project Status:
Completed
Budget expenditure: $132,072.00
Principal Investigator: Simon Robertson
Organisation: Agriculture Victoria
Project start/end date: 14 Jun 1998 - 31 Mar 2002
Contact:
FRDC

Need

Current age determination methods, even when aided by image analysis software still depend on interpretation by an experienced "reader". The process of ageing is also laborious, time consuming and hence, relatively expensive. For production ageing, where there is an ongoing requirement for age estimates, there is a problem of consistency of interpretation. At present, when readers change, there is a substantial training and verification period needed to ensure that the new reader is interpreting otolith structure in a consistent and correct manner. Automatic ageing would have the primary advantage of being a far more objective method than is possible with even the best training, reducing discrepancies both between readers and organisations. This factor will increase the precision of estimates and therefore provide greater confidence for the stock assessment process. Benefits associated with the development of this technique also include the reduced sample processing time which would increase the number of samples able to be processed and hence, reduce the cost.

The pilot project which has been completed has demonstrated the potential for artificial neural networks to objectively and consistently classify samples of some species. With refinements of the system, it should be applicable to any species for which production ageing is required.

Objectives

1. Compare the effect of different forms of data input on the performance of an ANN model for automatic ageing.
2. Compare the effect of different forms of ANN models on their performance.
3. Develop a protocol for the application of an ANN model to the process of automatic ageing.

Final report

ISBN: 0-7311-5038-4
Author: Simon Robertson

Symposium on parasitic diseases of aquatic animals: 10th International Congress of Protozoology

Project number: 1997-336
Project Status:
Completed
Budget expenditure: $8,350.00
Principal Investigator: Bob J. Lester
Organisation: University of Queensland (UQ)
Project start/end date: 25 Apr 1997 - 4 Jan 1999
Contact:
FRDC

Need

The overseas speakers have agreed to come, speak at the Congress and speak to at least one other group while in Australia providing there is some assistance with their travel expenses. This is a great opportunity for members of the fishing and aquaculture industry to hear about latest developments in disease research. The proposed presence of these speakers at the Congress has already attracted other experts in marine disease to come to Australia for the Congress and these also will be meeting with special interest groups while here.

Objectives

1. The objective is to bring three overseas experts to explain about current developments in marine parasitology that relate to wild and caged tuna and other fish, prawns and oysters.

Final report

Author: Bob Lester
Final Report • 1998-11-18 • 519.90 KB
1997-336-DLD.pdf

Summary

A symposium on protozoan diseases of aquatic animals was planned as a feature of the 10th International Congress of Protozoology.

Speakers invited for the symposium were: Dr Mike Hine, NIWA, NZ, an expert on oyster and fish diseases, Prof. Tim Flegel, Mahidol University, Bangkok, an expert on prawn diseases, Dr El-Matbouli, University of Munich, an expert on myxosporeans of fish, and Prof. Bob Lester, University of Queensland, to talk on white spot disease in fish and to chair the symposium.

View Filter

Species