46 results
Environment
PROJECT NUMBER • 2019-176
PROJECT STATUS:
COMPLETED

NCCP: Determination of the susceptibility of silver perch, Murray cod and rainbow trout to infection with CyHV-3

This research sought to build on the experimental evidence regarding non-target species susceptibility to CyHV-3. Three species which had been previously tested, but for which additional evidence would be needed to confirm non-susceptibility included Rainbow Trout, Silver Perch and Murray Cod. 
ORGANISATION:
CSIRO Australian Animal Health Laboratory
Environment
PROJECT NUMBER • 2019-163
PROJECT STATUS:
COMPLETED

NCCP: Understanding the genetics and genomics of carp strains and susceptibility to CyHV-3

To assess the risk that rapid resistance to CyHV-3 might develop, we undertook an extension to the integrated modelling with the objectives of defining what exactly is “resistance” in the context of viral biocontrol, and to elucidate the mechanisms (pathways) by which it might develop....
ORGANISATION:
CSIRO Australian Animal Health Laboratory
Industry
PROJECT NUMBER • 2019-089
PROJECT STATUS:
COMPLETED

Evaluation of point of care (POC) tests for White Spot Syndrome Virus (WSSV)

The CSIRO Australian Centre for Disease Preparedness (ACDP) Fish Diseases Laboratory (AFDL), in collaboration with Biosecurity Queensland, conducted a laboratory-based evaluation of commercially available point-of-care (POC) tests designed to detect white spot syndrome virus (WSSV) in the field. The...
ORGANISATION:
CSIRO Australian Animal Health Laboratory
Environment
PROJECT NUMBER • 2017-135
PROJECT STATUS:
COMPLETED

NCCP: essential studies on cyprinid herpesvirus 3 (CyHV-3) prior to release of the virus in Australian waters

This project, undertaken by CSIRO, aimed to determine the most important form of transmission of CyHV-3 to Cyprinus carpio (common carp). This was addressed through experiments to determine: (1) The relative amounts of virus in the skin and mucus of infected fish vs shed...
ORGANISATION:
CSIRO Australian Animal Health Laboratory
Industry
PROJECT NUMBER • 2017-117
PROJECT STATUS:
COMPLETED

Identification of differentially expressed innate immune genes in the New Zealand paua (Haliotis iris) and the Australian hybrid abalone (H. laevigata X H. rubra) upon immersion challenge with the abalone herpesvirus-1 (HaHV)

This project was carried out by scientists from AAHL CSIRO (Dr Serge Corbeil) and from LaTrobe University (Drs Karla Helbig and Subir Sarker). After discovering the existence of an abalone species (Päua - Haliotis iris) resistant to AVG our research team based in Geelong and Melbourne...
ORGANISATION:
CSIRO Australian Animal Health Laboratory
Blank
PROJECT NUMBER • 2016-404
PROJECT STATUS:
COMPLETED

Aquatic Animal Health and Biosecurity Subprogram: Strategic planning, project management and adoption

This report is about the activities of the FRDC’s Aquatic Animal Health and Biosecurity Subprogram (AAHBS) for the period 2016-2020. In the period 2016-20, AAHBS has managed 27 projects concerned with aquatic animal health and biosecurity. AAHBS also provided advice on other aquatic...
ORGANISATION:
CSIRO Australian Animal Health Laboratory

Design standards for experimental and field studies to evaluate diagnostic accuracy of tests for infectious diseases in aquatic animals

Project number: 2015-045
Project Status:
Completed
Budget expenditure: $24,000.00
Principal Investigator: Mark S. Crane
Organisation: CSIRO Australian Animal Health Laboratory
Project start/end date: 31 May 2016 - 30 Mar 2017
Contact:
FRDC

Need

In aquatic animals, experimental studies are often used to study the pathogenicity of an etiologic agent; to study interactions between the host, pathogen, and environment; and to evaluate the comparative performance of existing and novel diagnostics. In the latter case, specimens are sometimes collected from animals at different stages of infection post-challenge to demonstrate temporal changes in diagnostic sensitivity post-challenge. Diagnostic accuracy studies should be designed to assess a test’s fitness for a designated purpose, and the design should also inform reporting in peer-reviewed journals. Reported studies should include clear descriptions of purpose and intended application, and authors should discuss the limitations of their results in the context of other available or currently-used tests to facilitate informed decisions by end-users. In human medical research, standards exist for various aspects of diagnostic test research, including guidelines for accurate and transparent reporting and for quality assessment of methodologies in systematic reviews of diagnostic-accuracy studies. Similar standards are required for animal, including aquatic animal, research. It is anticipated that the established criteria, from human clinical research for evaluating diagnostic accuracy studies, can be adapted to develop a standardized set of criteria for the design of field and experimental studies to assess diagnostic accuracy for infectious diseases in aquatic animals.

Objectives

1. Evaluate (a) design criteria reported for diagnostic studies of OIE-listed diseases of finfish, molluscs and crustaceans and (b) test design and accuracy recommendations from OIE, peer-reviewed literature in aquatic animal health and other sources (e.g. aquatic animal health experts).
2. Develop a list of gaps or inconsistencies in current design criteria and reporting for OIE-listed diseases in aquatic species, based on collected recommendations from Objective 1.
3. Compile consensus-based standards in an applicable format for diagnostic studies in finfish, molluscs and crustaceans for use by research journals and laboratories.

Final report

ISBN: 978-1-4863-1280-1
Authors: Mark St. J. Crane Peter G. Mohr Nick J. G. Moody
Final Report • 2019-06-01 • 433.17 KB
2015-045-DLD.pdf

Summary

Design and reporting quality are important parameters for assessing aquatic animal studies on diagnostic test sensitivity and specificity however standards for experimental design are lacking. As part of this study, design guidelines to improve the quality of published studies on test specificity and sensitivity on natural disease events well as experimental infectivity trials.

Thus important metrics for consideration at the design phase of diagnostic accuracy studies (DAS) include study purpose, targeted disease state (clinically diseased vs infected but apparently healthy), selection of appropriate samples and specimens, laboratory analytical methods, statistical methods and data interpretation. Implementing standards for designing DAS will assist in appropriate test selection for specific testing purposes and minimize the risk of reporting biased estimates of diagnostic sensitivity and specificity. In addition, with respect to pool-level sensitivity, using the developed protocols in DAS will ensure that the effect of pooling samples for the specified disease agents and hosts on diagnostic sensitivity will be clearly defined.
Industry
PROJECT NUMBER • 2015-005
PROJECT STATUS:
COMPLETED

Determining the susceptibility of Australian Penaeus monodon and Penaeus merguiensis to newly identified enzootic (YHV7) and exotic (YHV8 and YHV10) Yellow head virus (YHV) genotypes

In recent years, new genotypes within the yellow head complex of viruses have been discovered in farmed prawns both within Australia and overseas. This report describes research undertaken at the CSIRO Australian Centre for Disease Preparedness Fish Diseases Laboratory (ACDP AFDL), Geelong, Victoria...
ORGANISATION:
CSIRO Australian Animal Health Laboratory
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