8 results

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: model development for epidemiology of Amoebic Gill Disease

Project number: 2001-245
Project Status:
Completed
Budget expenditure: $322,051.00
Principal Investigator: Barbara Nowak
Organisation: University of Tasmania (UTAS)
Project start/end date: 30 Jan 2002 - 23 May 2005
:

Need

The Australian salmon industry is free from the major infectious diseases affecting salmon industries in other countries. Amoebic Gill Disease is the main infectious disease affecting the salmon industry in Tasmania. While this disease occurs in other countries, it does not appear to be as severe as in Australia. The disease-related fish mortalities are greatly reduced by freshwater bathing, however the disease treatment results in greater production costs and reduces the Australian salmon industry’s ability to compete in international markets. While development of a vaccine to protect against the causative agent is a desirable solution for the industry, it must be appreciated that this is a challenging task and requires a long-term view. In the meantime, the industry needs more knowledge of AGD epidemiology and more tools to improve management of fish with AGD on the farms, which would improve AGD treatment and control and decrease the risk of large outbreaks of AGD. As a direct result this should lead to reduced production costs. Improved understanding of the epidemiology of the disease will also provide a valuable basis on which to develop strategies for vaccine application in the future.

The ultimate goal is to have an AGD surveillance system in place, to provide information about the host, agent and environment which is relevant to prevention and management of the disease. The results will improve our understanding of factors contributing to AGD outbreaks and will develop a best industry practice protocol aimed at the reduction of AGD effects on the salmon industry in Tasmania. Information from the surveillance system will facilitate better decisions on the timing of treatments as well as provide long term data for analysis to identify additional management strategies aimed at minimisation of disease risks and economic impacts. Specifically, farm-level surveillance data will eventually provide a basis for measuring spatial and temporal trends in AGD occurrence in both the host and potential reservoirs as well as environmental and production factors associated with changes in AGD occurrence. Analysis of retrospective data will permit the identification of improved management strategies as well as providing farm managers with a more reliable basis on which to make decisions on prevention and control. This project will provide ways of value adding to the data collected by the salmon industry in general. It will protect individual company interests with respect to privacy of commercial information.

Objectives

1. Identification of Neoparamoeba pemaquidensis reservoirs
2. Identification of risk factors for AGD including the spatial relationship between infected and uninfected cages.
3. Development of a pilot surveillance system

Final report

ISBN: 1-86295-227-2
Author: Barbara Nowak
Final Report • 2005-01-17 • 1.92 MB
2001-245-DLD.pdf

Summary

Amoebic Gill Disease (AGD) is the main health problem affecting salmon industry in Southern Tasmania.  To improve management of fish with AGD on the farms, the industry needs better understanding of AGD epidemiology.  This will provide a basis on which to develop strategies for new treatment or vaccine application in the future.

We have identified reservoirs of the amoeba causing AGD in Atlantic salmon in Tasmania.  The amoebae were widespread and easily isolated from marine and estuarine sediments and cage netting.  There was no apparent relationship between the presence of the amoebae in the environment and AGD prevalence in the cages.  Development of methods to isolate amoebae from water samples and to accurately quantify the amoebae is needed if the relationship between the amoebae in the environment and AGD outbreaks is to be fully understood. However, computer simulations suggested that once fish in a cage are infected with AGD, they become the main source of amoebae and other reservoirs become insignificant.

This project provided specialised training in introductory and advanced epidemiology, sampling design, design of field trials and data analysis to all stakeholders, including researchers, government veterinarians and industry. Potential for AGD data sharing and analysis for the whole industry was discussed. A trial AGD database was set up, however industry showed no interest in using it. A computer model was developed based on data from one farm collected during 2003.  While the simulations provided interesting insights and identified knowledge gaps, the model could not be validated using data from the same farm from 2002, proving that it has serious limitations.   Increased understanding of the disease outbreaks dynamics is needed before a predictive model of AGD can be developed.

Environment
PROJECT NUMBER • 1999-201
PROJECT STATUS:
COMPLETED

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: development of selective enrichment culture-polymerase chain reaction (SEC-PCR) for the detection of bacterial pathogens in covertly infected farmed salmonid fish

Bacterial disease is a major cause of stock loss in aquaculture. The severity of infection may range from acute to chronic through to benign. This latter condition, termed covert infection, is insidious, as fish may appear to be outwardly healthy but during periods of stress, these carriers may...
ORGANISATION:
University of Tasmania (UTAS)

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: treatment and pathophysiology of Amoebic Gill Disease

Project number: 2001-205
Project Status:
Completed
Budget expenditure: $659,515.00
Principal Investigator: Mark Powell
Organisation: University of Tasmania (UTAS)
Project start/end date: 30 Jan 2002 - 20 Oct 2005
:

Need

There is an urgent need to develop novel treatments which would reduce the impact of AGD on salmon industry. A detailed benefit – cost analysis for the AQUAFIN CRC AGD project was undertaken which gave a Net Present Value of the economic benefit of $21.6M, Benefit/Cost Ratio of 5.3. The current project will deliver the short-term solutions and provide information and advice to the industry on a regular basis.

The current project is part of an integrated research program, with deliverables not only aligned with the development of novel treatments, but also with effective vaccine development, management and other control methods. Developing and maintaining standarised infection is included in this subproject, and it will be crucial for vaccine testing and experimental work within the Host-pathogen interaction project and the Model development – epidemiology of AGD project. The development of a quantitative experimental challenge model is an essential prerequisite to vaccine research and novel treatment testing. Without the quantitative experimental model it is very difficult to compare effectiveness of treatments or vaccines tested in separate experiments. Additionally, the controlled lab infection will provide crude gill isolates to researchers working in other projects.

The growth of the industry and ineffectiveness of freshwater bathing has resulted in the need for the development of new treatments that will either aid in improving current freshwater bathing technology, or offer completely new avenues for the treatment of AGD in Atlantic salmon. Effective treatment of the disease can only be achieved if we understand the physiological and pathological processes at work. To this end it is imperative that we understand:

1. The effect of the parasite on the normal physiology of the salmon so resulting in mortality
2. The effect of the treatment on the parasite
3. The effects of the treatment on fish parasitised to different degrees (I.e., potential toxicity side effects of treatments)

Successful treatments will be rapidly adopted by the industry given the problems with freshwater bathing technology. Advances in the development of either additives to the current freshwater baths or freshwater bath replacement by a less time-consuming chemical treatment will ensure that treatment and control of AGD as a constraint to Atlantic salmon production in Tasmania is eliminated.

Objectives

1. Establish an on-going laboratory source of AGD affected fish.
2. Establish and validate controlled infection/challenge system.
3. To understand how AGD affects the respiratory and cardiovascular systems of Atlantic salmon.
4. To determine how environmental parameters interact with AGD pathophysiology. In particular the interaction of temperature, oxygen, salinity, and carbon dioxide.
5. To develop and test new chemical or pharmaceutical treatments for the control of AGD.
6. To optimise the efficacy of current treatments by minimising the physiological impact on the fish.
Environment
PROJECT NUMBER • 2014-241
PROJECT STATUS:
COMPLETED

Reassessment of intertidal macroalgal communities near to and distant from salmon farms and an evaluation of using drones to survey macroalgal distribution

The salmon farming industry has significantly expanded in South-eastern Tasmanian both in production and in number and location of farms. Along with this expansion has been an increasing concern from the general community about the effects of salmon farms on the environment. This includes a reported...
ORGANISATION:
University of Tasmania (UTAS)
Environment
PROJECT NUMBER • 2015-024
PROJECT STATUS:
CURRENT

Managing ecosystem interactions across differing environments: building flexibility and risk assurance into environmental management strategies

Summary The overarching aim of this research was to provide an improved understanding of the environmental interactions of Atlantic Salmon farming and to provide recommendations to both government and industry on monitoring and management strategies that are appropriate to the level of risk...
ORGANISATION:
University of Tasmania (UTAS)

Clarifying the relationship between salmon farm nutrient loads and changes in macroalgal community structure/ distribution (Existing Student Support)

Project number: 2011-042
Project Status:
Completed
Budget expenditure: $44,929.56
Principal Investigator: Catriona Macleod
Organisation: University of Tasmania (UTAS)
Project start/end date: 31 Jan 2012 - 29 Jun 2015
:

Need

This project provides research support for 2 PhD students - enabling them to target their studies to issues relevant to the local salmon farming industry in particular the need for research on “Nutrient Production” identified in TSGA research priorities (2011).
Growth of salmon farming in SE Tasmania is currently limited by a feed input cap. This has arisen as a result of concerns that increased nutrients associated with salmon farming may be affecting local water quality. In addition there have been anecdotal reports that changes in macroalgal community structure, and in particular proliferation of nuisance algae species (i.e. Ulva), are related to the expansion of local salmon farming operations.
These PhD projects in combination will specifically evaluate the response of macroalgal communities to changing nutrient and environmental conditions and the implications of this for local and system wide nutrient load management.
Scott Hadley is looking to evaluate the potential to mitigate/ offset nutrient loads using target species deployment and will look at testing scenarios in a model environment to establish spatial and temporal optima for such mitigation strategies.
Whilst Luis Henriquez aims to better define the effects of changing nutrient regimes on local macroalgal communities and to measure differences in nutrient assimilation capacity of key species under differing environmental conditions.
The combined research of these students will provide a much better understanding of the driving factors behind potential "hotspots" in estuarine systems, the likely effects of these on macroalgal communities and the potential for natural and managed nutrient offsets.

Objectives

1. Clarify the effect of nutrient changes on key macroalgal species under a variety of different environmental conditions
2. Characterise macroalgal communities in potential "hotspots" and identify key species
3. Describe the influence of nutrients, natural and anthropogenic, in potential "hotspots" by synthesising the findings of the empirical and modelling studies.
4. Make recommendations as to cost effectiveness of alternate options for nutrient mitigation based on all available data.

Final report

ISBN: 978-1-86295-865-4
Author: Catriona Macleod
Industry
PROJECT NUMBER • 2005-201
PROJECT STATUS:
COMPLETED

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: environmental control of growth and early maturation in salmonids

At present the culture of Atlantic salmon within Australia produces approximately 26,000 t of fish per annum and is a direct employer of over 1100 workers with the majority of farmed fish sold nationally and only 12% exported. Environmental conditions, such as increased temperatures and high light...
ORGANISATION:
University of Tasmania (UTAS)

Aquafin CRC - Atlantic Salmon Aquaculture Subprogram: host-pathogen interactions in Amoebic Gill Disease

Project number: 2001-244
Project Status:
Completed
Budget expenditure: $860,814.00
Principal Investigator: Barbara Nowak
Organisation: University of Tasmania (UTAS)
Project start/end date: 30 Jan 2002 - 23 May 2005
:

Need

This project will develop methods and provide information for vaccine and novel treatment development. For example, techniques for the isolation and maintenance of N. pemaquidensis are based on monoxenic cultures. This culture is highly problematic because preparations of protozoa are contaminated with bacteria. Studies to determine cell function, protein and DNA composition have been seriously compromised by the bacteria. Culture relies on the use of agar. Cell propagation and harvesting by this system is time consuming and inefficient. Development of practical systems for cell factory production of N. pemaquidensis is required. This is important for studies of cell wall composition and cell function, which require considerable biomass. There is no model of infection using protozoa derived from monoxenic or xenic cultures. This represents a major limitation, particularly when it is necessary to use controlled doses of a single strain. Current methods rely on the use of N. pemaquidensis harvested from infected fish. While this strategy meets an immediate need, long-term it cannot be justified. Development of a method to grow in vitro virulent protozoa capable of infecting fish is an essential objective. The current library of N. pemaquidensis isolates obtained from fish with AGD is small and in continuous culture for almost 10 years. There is an urgent need to re-isolate N. pemaquidensis and expand the library to ensure an adequate range of phenotypes and genotypes. Preservation of N. pemaquidensis is an essential requirement of the AGD programme as it will maintain strain integrity, a vital objective for vaccine development. The complexity of growing N. pemaquidensis has proved a major limitation to studies on AGD. A centre of expertise in the culture of N. pemaquidensis should result in guaranteed supply of organism. A reference laboratory will ensure standardisation of cultures and uniformity of research outcomes.

Objectives

1. To provide a knowledge base for development of novel treatments and vaccines
2. To identify factors leading to binding of the parasite to fish gills
3. To identify gill conditions which increase the susceptibility of the fish to AGD
4. To develop techniques for in vitro work on Amoebic Gill Disease
5. To expand the library of N. pemaquidensis strains
6. To implement a long term preservation for N. pemaquidensis based on freezing technology
7. To develop improved culture systems based on monoxenic and axenic techniques
8. To develop cell factory capability to produce high density cell suspensions of N. pemaquidensis
9. To develop cell purification techniques to produce pure cell suspension of N. pemaquidensis derived from cell culture and gill associated disease.
10. To implement cell characterisation techniques for strain differentiation
11. To investigate culture strategies to develop infective strains of in vitro grown N. pemaquidensis

Final report

ISBN: 1-86295-222-1
Author: Barbara Nowak
Final Report • 2005-01-17 • 3.54 MB
2001-244-DLD.pdf

Summary

This project significantly increased our knowledge and understanding of Amoebic Gill Disease (AGD).  We developed tools and techniques applicable to further research on AGD and other fish diseases.  This project contributed to education and training in the area of fish health. Five PhD students and three postdoctoral fellows were involved in this project.  Development of case definition for AGD and increased understanding of AGD outbreaks in the field were of particular interest to the salmon industry.  Diagnostic services (Fish Health Unit, DPIWE) collaborated by providing expertise and adopting this project's results.
 
Prior to this project, our knowledge of Amoebic Gill Disease (AGD) was fundamentally limited. An improved understanding of host-pathogen interactions was required to provide a basis from which to develop effective strategies for future control and treatment of the disease.   This was achieved by the development of new techniques and adaptation of existing ones for the study of ecto-parasitic gill disease.
 
This project addressed the need for understanding disease development and progression. Sequential histopathology in both laboratory and field infections identified developmental stages of AGD, in terms of host response and pathogen proliferation and the disease’s strong association with salinity and temperature. This work enabled the introduction of an AGD case definition, providing consistent and repeatable disease interpretation for future studies.