3 results

SCRC: Masters M3.1 Nutritional Genomics and its Application to Aquaculture (Prof Abigail Elizur; Student Linda Moss)

Project number: 2009-765
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: Abigail Elizur
Organisation: University of the Sunshine Coast (USC)
Project start/end date: 25 Mar 2010 - 31 Jan 2012
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Need

The project aims to address the question: Can different aquaculture diets be assessed and evaluated by examining the expression profiles on known (or newly discovered) candidate genes that are responsible for, or associated with, the digestion and absorption of diet components.

Nutrition is a key significant consideration in aquaculture operations and absorption of molecular components of feed is the main factor contributing to nutrition in fish. An innovative alternative to feed trials is the use of nutritional genomics, where the specific response to the various diet at a gene expression level can potentially predict the quality of the diet and its suitabilty for optimum aquaculture use.

Candidate genes for such studies include genes associated with the digestion and absorption of nutrients i.e. trypsin, aminopeptidase, bile salt-activated lipase, insulin, glucagon and cholecstokinin. This project is expected to also lead to the discovery of a novel suite of genes whose expression is diet dependant, leading to the discovery of suitable markers for diet effectiveness, reducing the necessity and costs of feed trials.

The research done during the project is expected to greatly enhance our knowledge of the molecular processes with feed digestion, absorption and feed development, thus not only offereing an attractive testing alternative to diet development, but also explore the animal's response to different diets.

People development program: 2011 FRDC International Travel Bursaries- Abigail Elizur

Project number: 2008-314.27
Project Status:
Completed
Budget expenditure: $5,000.00
Principal Investigator: Abigail Elizur
Organisation: University of the Sunshine Coast (USC)
Project start/end date: 31 May 2011 - 29 Sep 2011
:

Need

This application is for an international bursary to attend a two week intensive course on next generation sequencing.

The course, held by Michigan University, will cover all aspects of bioinformatics analysis needed for transcriptomes and genome sequencing, as well as train in the analysis of sequences the course participants bring themselves.

At USC we have moved into the field of transcriptome and genome sequencing, and now have transcriptomes of 8 prawn tissues, pearl oyster, 2 fish tissues, and we are about to embark on sea cucumber and edible oyster sequencing, as well as tuna genomics. While capable of doing the basic analysis, this resource offers much more, and this course would train me for such analysis.

There are not many groups in Australia doing wide genome analysis of aquaculture species, and this training and materials provided in the course would put me in a position to not only service my FRDC and CRC grant industry partners, but also to train interested parties in Australia who are interested in expanding into this field. USC is investing in building up its aquaculture genetics portfolio, and this training opportunity would add to the strength of the group.

Elizur would extend her knowledge gained in this travel to the aquaculture community through lectures at a CRC or industry forums where there is potential for uptake. She will communicate with the CRC about opportunities to present to the student forum where molecular approaches could be adopted to address some of the research questions.

Objectives

1. To take part in a two week intensive course on analysis of next generation sequencing
Industry
PROJECT NUMBER • 2014-248
PROJECT STATUS:
COMPLETED

Understanding flesh colour variation in Atlantic salmon: molecular mechanisms and genetic effect

This report describes critical findings and new knowledge on flesh colour variation, from both a genetic and a molecular perspective, in Atlantic salmon in Tasmania. The investigation on flesh colour variation, due to its strong correlation with high seawater temperature, led to new important...
ORGANISATION:
University of the Sunshine Coast (USC)