110 results

Pathogenic Vibrio parahaemolyticus in Australian oysters

Project number: 2002-409
Project Status:
Completed
Budget expenditure: $13,995.00
Principal Investigator: Tom Lewis
Organisation: University of Tasmania (UTAS)
Project start/end date: 28 May 2002 - 30 Aug 2003
Contact:
FRDC

Need

In 1999, Seafood Services Australia (SSA) initiated a risk-based approach to assessing and managing hazards. Regarding oysters, two risk assessments were undertaken, one on viruses and one on vibrios. Focusing on the latter hazards, the risks associated with the three main species: V. parahaemolyticus, V. vulnificus and V. cholerae were assessed. It was noted that V. parahaemolyticus (Vp) has recently caused major outbreaks in USA from consumption of oysters due to a “new” pathogenic type O3:K6. For Australia, no work on pathogenic Vp in oysters could be found, which introduced a great deal of uncertainty to the assessment. The RA noted that there had been two Vp poisonings in NSW from prawns imported from Indonesia, the clear inference being that pathogenic Vp exists in neighbouring waters.

In March, 2002 the FAO/WHO team will develop a global risk assessment of Vp in oysters. The RA will utilise the US risk model and insert data from the oyster industries of Canada, New Zealand, Australia and Japan. If no Australian data are available on levels of Vp the modellers will make assumptions which may well be disadvantageous to the Australian industry. This could happen if the north American mitigation strategy (rapid icing) to control of Vp is adopted as a prerequisite for export.

Failure to input Australian data into a Codex global risk assessment could have serious consequences for the industry. At best it would lead to protracted negotiation between Australia and Codex. These negotiations would need to be science-based and a research program would need to be funded. It is probable that the scale of this investigation would be at least a log scale larger than the present application.

Among the strategies to mitigate V. parahaemolyticus risk is chilling oysters as early as possible after harvest. In the case of the Canadian industry in British Columbia, the strategy has been used successfully in the summers of 2000 and 2001. This strategy is directly opposed to current summer handling practices by the NSW industry which allows product to remain as warm as 25°C for up to three days.

This project is designed to provide evidence of the occurrence and prevalence of pathogenic and non-pathogenic V. parahaemolyticus in Australian oysters. This knowledge will be invaluable to the NSW industry in particular - in case the FAO/WHO assessment recommends chilling of oysters as a pre-requisite for market access.

Effect of not doing the proposed study

If the work is not done and Codex Committee on Food Hygiene (CCFH) recommend a mitigation strategy of rapid icing, the local industry has a number of choices:

1. Ignore the CCFH recommendation on the grounds that we don’t export large volumes of oysters. The problem with this approach is that Codex has just as much application and force for domestic production as it does in the export arena.

2. Undertake a study to try to show that there is no problem with V. parahaemolyticus from Australian product. This would probably be a larger study than the present one and would be mounted to attempt to gain exemption for Australia. It’s always difficult to unwind global hygiene edicts.

The present project, for a relatively modest investment, effectively places Australian data into a global risk assessment. As such the data will have great force in the modelling phase. xbad

Objectives

1. Obtain total Vibrio spp. and total V. parahaemolyticus counts from oysters from NSW, SA and Tasmania.
2. Determine prevalence of pathogenic V. parahaemolyticus amongst these isolates.
3. Compile and analyse data for potential inclusion in the FAO-WHO global risk assessment of Vibrio parahaemolyticus in oysters.

Final report

ISBN: 1-86295-071-7
Author: Dr T. Lewis Dr M. Brown Mr G. Abell Prof. T. McMeekin Dr J. Sumner
Final Report • 2003-08-22 • 350.70 KB
2002-409-DLD.pdf

Summary

This project was designed to produce a “snapshot” of the prevalence of the bacterium Vibrio parahaemolyticus in Australian oysters during March and April of 2002.

V. parahaemolyticus occurs in two main forms: pathogenic and non-pathogenic. In the past 3 years there have been several large outbreaks of food poisoning in North America from oysters contaminated with the pathogenic type of V. parahaemolyticus.

This project examined samples of oysters from NSW, Tasmania and South Australia for the total and pathogenic V. parahaemolyticus. Single samples of 10-12 oysters were collected from selected sites in each state. Bacteria from these oysters were isolated and examined using DNA probes designed to detect either total or pathogenic V. parahaemolyticus isolates.

Keywords: Vibrio parahaemolyticus, oysters, pathogenicity, risk assessment.

Development of techniques for production of homozygous Pacific oysters

Project number: 2002-204
Project Status:
Completed
Budget expenditure: $247,312.84
Principal Investigator: Xiaoxu Li
Organisation: SARDI Food Safety and Innovation
Project start/end date: 29 Jun 2002 - 30 Sep 2008
Contact:
FRDC

Need

Commercial in confidence. To know more about this project please contact FRDC.

Objectives

Commercial in confidence

Sustainable genetic improvement of Pacific oysters in Tasmania and South Australia

Project number: 2000-206
Project Status:
Completed
Budget expenditure: $737,531.00
Principal Investigator: Bob Ward
Organisation: CSIRO Oceans and Atmosphere Hobart
Project start/end date: 29 Dec 2000 - 4 Jan 2006
Contact:
FRDC

Need

We have demonstrated that oyster characteristics deemed valuable by industry can be improved by selective breeding. We and industry are convinced that substantial performance increases for commercial lines are achievable.
Thus far we have concentrated our efforts on a single trait (growth), but we have a number of family lines which permit the improvement of several traits simultaneously. We plan to continue selecting for increased growth rate and combine these advances with other desirable traits such as high meat yield and irradication of the deleterious curl-back trait. This will yield a much improved commercial product.
Modifications to our existing protocols need to be trialed to see whether substantial gains in time and savings of funds are possible in the development of a long-term breeding strategy for broodstock improvement. We need to:

1. continue the breeding program through at least three more generations, in both the mass selection and family lines, by producing, where possible, improved lines every year rather than every two years as currently. Performance assessment will continue through to the second year.
2. develop a selection index which uses all information about genetic merit over several commercial traits. This is the sum of the commercial gains an individual can transmit weighted by commercial value.
3. monitor grow-out performance at one year of age and two years of age, to determine if crosses can be made at one year of age rather than two years. This would speed selective improvement. We need to assess whether performance at one year is a good indicator of performance at market size (currently ~2.5 years).

If the Joint Venture company (JVC) proposed to commercialise our work is not established, then we will need to:

4. work with industry to conduct trials of particular lines in both Tasmania and South Australia under full commercial conditions.
5. develop sophisticated long-term breeding plans which yield on-going performance improvements while avoiding the deleterious effects of inbreeding. These plans will be based on analysis of data collected during the project, and require a major commitment from both technical staff and geneticists.
FRDC funding is thus required to complete the development program and, if the JVC is not established, to conduct the commercialisation trials and development of breeding plans. If the JVC is established, then we would provide it with broodstock for the trials but would expect it to develop its own long-term breeding strategy with input from and collaboration with our technical staff and geneticists.

Objectives

1. Continued production of mass selection lines for growth rate and family lines for other industry-desired traits.
2. Creation of crossbred family lines to assess the feasibility of combining desirable traits from different families into a single line.
3. Development of a multi-trait selection index.
4. If the Joint Venture Company is not established by November 2000, we have the following additional objective: Assessment of the performance of chosen lines in full-scale commercial trials.
5. If the Joint Venture Company is not established by November 2000, we have the following additional objective: Development of a breeding plan for sustainable genetic improvement.
6. Development of a commercilisation strategy within 12 months of start.

Final report

ISBN: 1-921061-07-3
Author: Robert Ward
Final Report • 2005-12-15 • 1.68 MB
2000-206-DLD.pdf

Summary

The Pacific oyster breeding project initiated in FRDC 97/321 was continued. Both mass selection and family selection procedures were employed. The main trait of interest was growth rate, although shell shape and condition index were also recorded.

Families were monitored on five farms. Two were intertidal Tasmanian farms, one was a subtidal Tasmanian farm, and two were intertidal South Australian farms.

Growth rates among farms varied considerably, with the two South Australian farms generally producing higher growth rates than the three Tasmanian farms. However, rank performance of farms also varied from year to year, presumably due to environmental factors. Environmental variability from year to year makes inter-generational comparisons difficult, as any genetic gains may be confounded by environmental fluctuations. However, within any one generation, families generally performed with similar rank orders among farms, meaning that genotype by environment interactions were limited. That is, a good performing family at one farm usually also performed well at other farms.

There was a negative correlation between progeny numbers produced per family and weights at the end of nursery phase. This density dependent effect disappeared by the time oysters had reached two years of age.

Growth rates responded well to selection. The final generation of the project for which we have full data to the end of grow-out is generation four. In generation four, the mean of the mass selection lines and the mean of the family selection lines were both about 1.6x greater than the unselected commercial control line; while the three mass selection lines performed similarly, the fastest and slowest growing of the family selection lines had about 2.2x and 1.2x, respectively, the growth rate of the control line.

There was evidence in some but not all years of a negative correlation between growth rate and condition index. That is, the fastest growing families tended to have a lower condition index. However, condition index was estimated before animals reached market size, and there was some evidence that, at market size, differences in condition index might disappear. This needs further attention.

Attention was also paid to shape when selecting parents. In the fourth generation, virtually all oysters when individually measured showed acceptable shape. Indeed, using the ASI Shape Index, the mean shape scores of all selected families were lower than that of the control line, indicating superior shape for the selected families. There was some evidence that the heavier oysters were somewhat more elongate than lighter oysters, but the effect was very small.

There was also evidence from the fourth generation that the selected families showed less inter-individual variability for weight and condition index than the Control line; for shape variability there was little difference. Generally the selected lines gave more uniform product than the control line.

Full-scale commercial trials of some lines were undertaken. These were carried out to collect data from a much larger number of farms and also to expose these lines (and the project) to the wider community. Collecting reliable quantitative data from these lines proved impossible, but anecdotally these lines generally performed as well or better than control lines. These were necessarily early-generation lines and later lines would perform still better. Several lines have also been recently produced as standard commercial runs.

Heritability estimates indicated that additive genetic variance is present for most traits and that these could be exploited in any ongoing selective breeding program. Weight and length at both farms assessed (both Tasmanian) had high heritabilities, and at the better-sampled of these farms width and depth heritabilities were moderate to high. Overall there was no evidence for sire or dam (maternal) effects particularly in the parameter estimates from both farms. We observed very little evidence of genotype x environment interactions. 

Genetic gains for the multi-traits identified as economically important (weight, width index and depth index) were estimated under different market scenarios and different genetic selection strategies. High weight gains, predicted to be 28%, were still possible when applying sufficient selection pressure on width index and depth index to maintain current shape. The strategy that produced the best gain was family/within family selection.

Molecular genetic research included developing new microsatellite DNA loci and comparing levels of genetic variation in mass selection lines with those in natural populations. The later generations of mass selection lines were shown to have reduced numbers of microsatellite alleles while allozyme alleles had been maintained. It was considered that because the allozyme diversity had been maintained, the microsatellite allele loss was not a great concern at this time. Census broodstock numbers in the mass selection lines examined were greater than the biologically effective broodstock numbers. Broodstock numbers in mass selection lines need to be maintained at reasonable numbers (ideally around 40-50 per generation and with equal numbers of males and females). It was shown that microsatellite DNA genotyping of individual larvae was achievable.

The project and its predecessor FRDC 97/321 produced five generations of selectively bred oysters before the program was handed over to Australian Seafood Industries Pty Ltd (ASI). ASI was established by the Tasmanian and South Australian industries during the course of the project to ensure the continuation of the breeding program at the end of the project and to facilitate technological transfer to industry. 

Keywords: Pacific oyster, Crassostrea gigas,  growth rate, heritability, genetic selection,  selection index, microsatellites.

Industry
PROJECT NUMBER • 1999-332
PROJECT STATUS:
COMPLETED

Development of a national biotoxin strategy

In Australia aquaculture and wild harvest of shellfish is an economically important and growing industry. The safety of these products as a food source is of utmost importance from both public health and economic points of view. One of the potential problems faced by shellfish growers is...
ORGANISATION:
Department of Primary Industries and Regions South Australia (PIRSA)

Optimal stocking density for Sydney and Pacific oyster cultivation

Project number: 1999-307
Project Status:
Completed
Budget expenditure: $78,292.00
Principal Investigator: Tony Underwood
Organisation: University of Sydney (USYD)
Project start/end date: 25 Jul 1999 - 30 Jun 2002
Contact:
FRDC

Need

A means of quantifying the optimal stocking density of oysters relative to their food resources (quantity and nutritional quality) is a necessary feature in the sustainable management of the oyster industry at a time of increasing demand both for a greater volume of production and improved production efficiency. This has been recognized by the industry as a major need for there to be further development of production. It is also urgent because of increasing scrutiny and regulation under principles of ecologically sustainable development. Maximal development can only be sustainable if local carrying capacity is well understood.

Of the various ways, in theory, of arriving at quantification of optimal densities, an approach which concentrates upon the oyster and its food, measured initially at the scale of the individual lease, is practical and feasible. Once this relationship is defined, it may then with confidence be extended to a variety of habitat conditions, since it will be based upon the fundamental physiological properties of the species.

This proposal aims to define these relationships via rigorous physiological determinations, coupled with appropriate field studies and modelling. The proposed product will be a tool of value to the oyster farmer and to those concerned with planning and approving the expansion of leases within coastal habitats.

Objectives

1. To establish a functional relationship between stocking density, individual growth rate and yield for Sydney rock and Pacific oysters in an estuarine embayment in the Port Stephens estuary.
2. To generalise this relationship for relevance to other habitats by determining the interactions between available food, the feeding physiology and the growth of these oysters.
3. To use these formal relationships to demonstrate the optimal stocking densities for oyster cultivation in a variety of different environmental conditions.
4. To investigate the influence that feral oysters have upon such optimal density estimates.
5. To relate stocking density to the quality of the marketed oysters and investigate possible economic implications.

Final report

ISBN: 1-86487-487-2
Author: Tony Underwood

Oyster depuration: a re-assessment of depuration conditions and the role of bacterial and viral indicators in determining depuration effectiveness

Project number: 1998-319
Project Status:
Completed
Budget expenditure: $284,053.03
Principal Investigator: Kenneth A. Buckle
Organisation: UNSW Sydney
Project start/end date: 28 Jun 1998 - 27 Jun 2005
Contact:
FRDC

Need

The NSW oyster industry has suffered severe economic losses during the past 20 years as the result of major outbreaks of gastroenteritis and other oyster-borne diseases. Further outbreaks will cripple the industry from immediate losses and resulting litigation.

There is an urgent need to re-examine the conditions for depuration of NSW oysters harvested in very different geographic and environmental conditions with particular reference to water temperature, salinity and turbidity during depuration. It is important to determine what limitations exist in the current technology and how they might affect purification efficiency and commercial acceptance by oyster farmers. In light of such information, there will be a need to modify the Code of Practice for Oyster Depuration. Equally important is the need to educate and train oyster farmers in proper quality assurance of oyster quality and safety, which will include optimal application of purification technology.

Current safety of oysters is assessed by the presence of E. coli as indicators of bacterial pathogens, yet the majority of oyster-borne disease is of viral origin, principally NV and more recently, HAV. Unfortunately, direct testing for human viruses in oysters is time consuming and very expensive, and will remain so for the foreseeable future. From the perspective of implementing a quality assurance program that will effectively protect public health, it is essential to have more accurate and more reliable indicator tests for the presence of human viruses in oysters. Consequently, there is a clear need to examine the relationship between the presence of bacterial indicators (E. coli), coliphages and human infectious viruses in oysters before, during and after purification. Such a study will not only clarify the behaviour of viruses during purification but could lead to a rapid coliphage assay as a more accurate indicator of human virus presence in oysters.

Objectives

1. To optimize the process of oyster depuration with respect to conditions of: initial load of contamination
water temperature, salinity, turbidity and oxygen content
oyster: water ratio
time of depuration
geographical location of oysters
and oyster eating quality.
2. Based on the findings from objective 1, and in consultation with the NSW Department of Health, NSW Fisheries and representatives of the oyster industry, develop and write modifications to the Code of Practice for the Depuration of Oysters in NSW.
3. In conjunction with the NSW Shellfish Quality Assurance Program, conduct a series of workshops aimed at education of farmers in management of the quality and safety of oysters.
4. Investigate the possibility of using bacteriophages as an additional indicator of oyster safety and the performance of oyster depuration, with specific reference to the elimination of human viruses such as Norwalk and Hepatitis A viruses. Correlate bacteriophage occurrence and behaviour in oysters during purification with traditional E. coli standards and human virus behaviour as measured by an inactivated strain of polio virus.

Breeding F1 hybrid oysters from doubled haploids

Project number: 1998-313
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: Greg Kirby
Organisation: Flinders University
Project start/end date: 29 Jun 1999 - 30 Dec 2004
Contact:
FRDC

Need

A major problem facing Pacific oyster growers throughout southern Australia is maintaining consistent product quality. High levels of genetic variability in oysters cause considerable variation in several economically important traits such as growth rate and condition. Variation in growth rate causes extra work because of the need for frequent grading, while variation in condition within a batch may prevent growers from obtaining a market for their oysters. Even for those oysters which are of sufficient quality to reach the market, supplying oysters that vary in condition, or colour for example, creates a perception of poor quality control and undermines market confidence in the suppliers (and hence in the growers). This variability in product quality is currently unavoidable simply because of the intrinsic genetic variation in oyster stocks.

If genetically uniform oysters could be produced, then a major source of variation in product quality would have been removed from the oyster industry. All oysters grown from a batch of genetically identical spat should respond similarly in any given environment. Consequently, considerable improvements in consistency of product quality and appearance could be achieved. These genetically uniform oysters would still show some variation in (e.g.) growth rate and degree of condition due to differences in the environments they experience — for example, oysters which had been growing at the centre of a basket or lease may gain condition more slowly than those at the edge — however, because this variation would now be solely due to environmental factors, growers would be able to rapidly identify and control these factors. This would increase consistency of product quality still further.

A second major limitation to the oyster industry at present is a lack of stock which have been genetically selected to produce commercially desirable characteristics. Given the wide variation in environmental conditions under which Pacific oysters are grown in Australia (from cold, low-salinity waters off Tasmania, to warm, high salinity waters in S.Australia) considerable opportunity exists to breed oysters which have been genetically selected to perform well in a given environment. The Pacific oyster industry has recently engaged in a research programme which aims to selectively breed oysters that match grower and market demands more closely than present stocks. However, this programme uses conventional breeding techniques, and (commercial) benefits to growers cannot be expected for some considerable time.

Objectives

1. To obtain at least 20 (and preferably 100) families of doubled haploid Pacific oysters
2. From some of these doubled haploid oysters, establish inbred lines that contain both sexes so that they can be maintained by normal breeding procedures
3. To use these inbred lines to trial a range of F1 hybrids and identify the best F1 hybrid (or hybrids) for commercial production of genetically uniform batches of oysters

Huon estuary study: environmental research for integrated catchment management and aquaculture

Project number: 1996-284
Project Status:
Completed
Budget expenditure: $676,121.00
Principal Investigator: Edward C. Butler
Organisation: CSIRO Oceans and Atmosphere Hobart
Project start/end date: 28 Jun 1996 - 31 Oct 2000
Contact:
FRDC

Objectives

1. Determine the sources, distribution and cycling of nutrients (including those from fish farming) in the Huon River estuary, and relate nutrients and physical parameters to algal dynamics
2. Evaluate the processes (and their rates) that contribute organic matter to sediments from fish farming and natural sources
and the significance of this organic matter in the cycling of nutrients through the sediments
3. Determine the sedimentary distribution of organic matter around the fish cages that ensues from farm operation, and the time needed for degraded sediments to return to ambient conditions when cages are removed
4. Test the usefulness of different methods for monitoring the environmental quality of sediments and the water column to, (i) provide a scientific basis for the design of a monitoring framework for both industry and environmental managers, and (ii) give technical advice on optimising such a framework to address both localised impacts and general estuarine conditions

Final report

ISBN: 0-643-06225-4
Author: Edward Butler

Dynamics of harmful Rhizosolenia cf. chunii blooms in Port Phillip Bay.

Project number: 1996-264
Project Status:
Completed
Budget expenditure: $38,273.00
Principal Investigator: Graeme Arnott
Organisation: Agriculture Victoria
Project start/end date: 29 Jun 1996 - 29 Jun 1999
Contact:
FRDC

Objectives

1. To document the frequency, intensity, duration and spatial occurrence of Rhizosolenia cf. chunii blooms in Port Phillip Bay from 1987 to 1995.
2. To investigate the environmental factors that influence the onset, development and timing of Rhizosolenia cf. chunii blooms in Port Phillip Bay.
3. To recommend coastal management and growing/ harvesting strategies to reduce the adverse impact of Rhizosolenia cf. chunii blooms on the marketability of cultured mussels and southern scallops from Port Phillip Bay and Pacific oysters from adjacent salt ponds.
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