107,690 results
Environment

Development of Field Implemented Fillet Identification (FIFI) for coral reef fin fish

Project number: 2005-011
Project Status:
Completed
Budget expenditure: $200,598.50
Principal Investigator: Jane Oakey
Organisation: Department of Primary Industries (QLD)
Project start/end date: 29 Jun 2005 - 30 Sep 2008
Contact:
FRDC

Need

1. The need to manage the growth of the coral reef fishery to prevent depletion of this natural resource, and its associated ecosystems, has been clearly identified and legislation has been put in place under the Fisheries (Coral Reef Fin Fish) Management Plan 2003. To ensure compliance, Officers must be able to identify the fish they are inspecting, and currently there is no suitable test to identify fish fillets in the field and to confirm that commercial and recreational fishers comply with quota and possession limits, thus assuring sustainability of the resource.

2. Recent research by the PI has shown that DNA sequencing can identify coral reef finfish to a species level even when visible markers have been removed (such as through filleting). However, DNA sequencing is complex and expensive making it unsuitable for screening large numbers of fillets. Thus, there is a need for a tool that can identify fish species, be rapidly and easily used at sea, and is sufficiently discriminatory to differentiate between closely related coral reef fin fish. Public awareness of such a tool will deter non-compliance.

3. Development of this test is supported by several State and Commonwealth R&D plans and priorities that result from identified needs. The following plans identify sustainability of natural resources:
a. Queensland Fishing Industry Research Advisory Committee priorities include identification of performance indicators and development of tools (priority 1.7), which is the aim of the project. This proposal is supported by QFIRAC.
b. FRDC: legislative, institutional, compliance and policy arrangements; and fisheries and ecosystem management methods (Strategies 7 and 10, Natural Resources Sustainability) identifies the need for compliance tools such as that proposed.
c. Queensland State: Development of Enabling Technologies (Priority 1) includes biotechnology as used in this project proposal. Sustainable Queensland Coastlines and Great Barrier Reef (Priority 2) has been discussed above; and Tropical Futures (Priority 5) addresses issues, problems and opportunities in tropical regions, and this proposal promotes regional science to answer a regional need.
d. Fisheries research priorities for all Australian States include sustainability of natural resources and a rapid field-test for specific DNA sequences could apply to particular species of interest from any location.

Objectives

1. To develop a rapid, simple and inexpensive method to indicate the presence of target mitochondrial DNA (mtDNA) sequences from restricted and protected coral reef fin fish species.
2. To optimise and validate this method as a field test to detect the presence of, and to identify, restricted species of coral reef fin fish species from samples that have had phenotypic markers removed (such as fillets), and to confirm that cross-reactivity with unrestricted species will not occur. This will form the basis of FIFI (Field Implemented Fillet Identification), and subsequently be used by fisheries officers as a compliance tool for the Fisheries (Coral Reef Fin Fish) Management Plan.
3. To workshop and demonstrate FIFI in order to train and familiarise fisheries officers and any other interested parties in its use (extension).
4. To use media coverage to create public awareness of FIFI and deter non-compliance with fishing regulations.
5. To investigate the most appropriate scientific communication of FIFI technology based upon the optimum procedures used (from objectives 1 and 2) and any current patents held on those procedures. This may include either publication or commercialisation.
Environment

Adaptive frameworks for Australian fishery observer programs: effort allocation and tools for decision support

Project number: 2005-002
Project Status:
Completed
Budget expenditure: $227,827.00
Principal Investigator: Jeffrey Dambacher
Organisation: CSIRO Oceans and Atmosphere Hobart
Project start/end date: 29 Jun 2005 - 30 Aug 2008
Contact:
FRDC

Need

Although each year millions of dollars are spent observing bycatch and assessing bycatch mitigation across Australian Commonwealth fisheries, there currently is no comprehensive analysis of observer data. For example, AFMA’s observer section compiles reports on seabird Threat Abatement Programs (TAP) containing summaries for numbers of birds caught, effort, and catch rates. While these statistics satisfy TAP reporting requirements, they nonetheless lack analysis of variation in catch rates over time, space, and among vessels. Hence understanding of why mitigation methods may or may not be working is hampered, ultimately to the detriment of industry. Also, recent analyses of observer data [1] have demonstrated a potential for predictive models based on fishing methods and oceanographic conditions to support management strategies minimising discard mortality and bycatch. Unfortunately such analyses are beyond the current scope of AFMA’s observer section, and a need exists for managers to receive and respond to information coming from observer programs in a timely manner. The need for streamlined analyses of observer data is not limited to bycatch issues alone, but extends to various management and research areas including ecological risk assessments for judging ecological sustainability, and stock assessments requiring observer data to develop calibrated analyses of standardized catch per unit effort.

A second major driver for the proposed work lies in the observation that while most fishery stakeholders agree on the need for observer programs, disagreement exists on appropriate levels of observer effort. NGO’s cite literature from within the NGO community [2] that coverage levels exceeding 50% are required to rigorously estimate bycatch, while the fishing industry argues that the capacity to pay limits what is possible. Clearly this isn’t a case of “one-size-fits-all”, and decisions on levels of observer coverage need to be framed against an array of what will sometimes be competing management objectives. We contend that this debate will benefit from a more rigorous statistical approach. Ultimately, managers require an adaptive approach that is both practical and transparent to the trade-offs involved.

This proposal addresses the needs outlined above by developing analytical and adaptive frameworks to infuse analyses of AFMA observer data into areas critical to Australian fisheries management, and supporting effective apportionment of observer effort.

---References---

[1] Dambacher, J.M., T.A. Patterson, J.S. Gunn, and T.I. Carter. 2003. Southern bluefin tuna by-catch in the Eastern Tuna and Billfish Fishery. Confidential Final Report-Project No. R00/1126. CSIRO Marine Research. Hobart.

[2] Babcock, E.A., E.K. Pikitch, and C.G. Hudson. 2003. How much observer coverage is enough to adequately estimate bycatch? Oceana, Washington DC, http://www.oceana.org/uploads/BabcockPikitchGray2003FinalReport.pdf.

Objectives

1. Develop software tools and analytical framework to support AFMA management decisions and research projects with streamlined and timely analyses of fishery observer data.
2. Develop statistical and organizational frameworks to assist in the allocation of observer effort within Australian fisheries.
3. Develop guidelines for sufficient and appropriate methods of analysis and reporting of AFMA observer data.
4. Develop an understanding of the relationship between catch rates of selected bycatch species, fishing gear and practices, and surrounding oceanographic environments.
5. Develop performance indicators and predictive models to support management of bycatch and discard mortality for sensitive or endangered species.
6. Assess quality of AFMA logbook data for bycatch species.

Final report

Author: Christian H. Moeseneder Jeffrey M. Dambacher Robert A. Campbell Fiona M. Giannini Emma K. Lawrence Alistair J. Hobday Jock W. Young
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