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People development program: 2013 Visiting Expert Bursary - Dr Raouf Kalida

Project number: 2008-328.19
Project Status:
Completed
Budget expenditure: $7,940.00
Principal Investigator: Mark Grubert
Organisation: Department of Agriculture and Fisheries (NT)
Project start/end date: 30 Jun 2013 - 30 Aug 2014
Contact:
FRDC

Need

Crustacean fisheries (such as those targeting rock losters, crabs and prawns) contribute more than a billion dollars to the Australian economy annually. Population models for stocks that support these fisheries often rely on indirect measures of age (e.g. size-modal analysis) which can confound estimates of other life history parameters and introduce errors into the modelling process.

A method to directly age commercially exploited crustaceans (by counting growth bands in calcified regions of the eyestalk and/or the gastric mill) has been developed by Dr Raouf Kalida at the University of New Brunswick, Canada and published last year. His technique has the potential to substantially improve the precision of stock assessments on crustacean fisheries around the world.

There is a need to transfer this technology to fisheries research agencies in Australia so that we can better understand growth patterns in crustaceans, reduce uncertainty in crustacean population models and provide better advice to fishery managers. This in turn should lead to improved management practices and greater stability in the national crustacean harvest, noting that production by several crustacean fisheries is also strongly linked to environmental factors.

The most effective means to address this need is to host Dr Kalida in Australia for a period of time to share his knowledge of crustacean ageing and provide guidance to domestic fisheries scientists working in the field. The proposed project aligns with a number of FRDC Strategic Priority Areas including: Theme 4 (Ecologically Sustainable Development), Theme 13 (Innovation Skills) and Theme 14 (Extension and Adoption).

Objectives

1. Transfer knowledge regarding crustacean ageing techniques to Australian fisheries scientists
2. Provide this group with practical experience in crustacean ageing techniques
3. Facilitate the exchange of ideas between fisheries scientists

People development program: 2012 Visiting expert bursaries - Professor Gudrun Marteinsdottir

Project number: 2008-328.17
Project Status:
Completed
Budget expenditure: $10,000.00
Principal Investigator: Gavin Begg
Organisation: SARDI Food Safety and Innovation
Project start/end date: 26 Sep 2012 - 31 Jul 2013
Contact:
FRDC

Need

Uncertainty poses a major challenge to the management and utilisation of marine fish resources. Significant efforts are made by fishing nations to estimate numbers and condition of exploited fish stocks, but assessments frequently bring unexpected results that range from relatively small shifts from former prognoses to changes of a significant and potentially detrimental magnitude. Such errors may be due to biased calculations or unaccounted causes of mortality, but can also stem from unforeseen changes in fish distribution or behaviour which remain unaccounted for.

To meet this challenge, SARDI and the University of Iceland aim to work together towards a solution that involves construction of a modeling environment, a “Multiverse”, which is a 3D modelled and data assimilated world of ocean physics and the living organism that can be evaluated with hindcasts and used to produce short- and long-term forecasts, as well as to test and answer key questions on climate change and fisheries monitoring/management.

Such an approach may be a suitable method for integrating the diverse data sets currently being proposed to be collected as part of a large-scale science program to explore mining exploration (and subsequent impacts) in the Great Australian Bight (GAB).

The collaboration will benefit from the complementary nature of the research groups from the highly data rich region of the North Atlantic to the relatively data poor environment of the GAB. The collaboration will facilitate discussion around the concept and potential for its application in an Australian context.

Objectives

1. Construct a blueprint of a three dimensional data assimilated Multiverse that describes the ocean physics and the living organisms that can be used to answer key questions on fish distribution, climate change and fisheries monitoring/management.

People development program: 2012 FRDC Visiting Expert Bursaries - Professor Sigbjorn Lien

Project number: 2008-328.16
Project Status:
Completed
Budget expenditure: $8,760.00
Principal Investigator: Sonja Dominik
Organisation: CSIRO Oceans and Atmosphere Hobart
Project start/end date: 31 Aug 2012 - 28 Feb 2013
Contact:
FRDC

Need

Strong foundations have been developed by CSIRO Food Futures Flagship for breeding programs in Atlantic salmon, hybrid abalone, Pacific oysters and Black Tiger Prawns. The next step is to draw on some of the high density molecular marker (SNP) technology to overcome challenges to further increase genetic gains, in particular for the enhancement of difficult to measure or lowly heritable traits. For Atlantic salmon, the evaluation by CSIRO of using selection approaches based on SNP markers (genomic selection) for the improvement of AGD resistance is about to conclude, and in the other industries, the molecular technologies for enhanced management strategies, are being developed.

Already in these first stages of dealing with SNP marker data, the need for efficient data processes has been recognised due to the volume of data. The risk of data mismanagement is high.

The Centre of Integrative Genetics (CIGENE) in Norway has been a leader in the development of tools for data processing and analysis to assist the agriculture and aquaculture sectors.

CIGENE has implemented their data processing pipeline in Galaxy, a scientific workflow software. Galaxy enables scientists with little programming skills to handle data of large volume efficiently, extract subsets and analyse data. The specific application of Galaxy for the purpose of genetic improvement is rare and CIGENE has expert knowledge in this area.

This Bursary for Prof Sigbjorn Lien, will enable the direct transfer of knowledge and skills to leading Australian researchers, and the discussion of the future of the technology with key industry stakeholders.

Objectives

1. To support a three week research and training visit to Australia by Prof Sigbjorn Lien of CIGENE
2. To review and asses the needs in SNP data handling, processing and analysis in Atlantic salmon and black tiger prawn breeding programs
3. 3) To transfer knowledge to researchers on the development a bioinformatics pipeline in Galaxy for SNP data in Atlantic salmon and black tiger prawn
4. 4) To provide industry with an overview of the use of molecular technologies in aquaculture breeding programs in Europe

2010 FRDC Visiting Expert Bursaries - Australian Prawn Farmers Association (APFA): Water Quality Experts

Project number: 2008-328.14
Project Status:
Completed
Budget expenditure: $10,000.00
Principal Investigator: Helen T. Burvill
Organisation: Australian Prawn Farmers Association (APFA)
Project start/end date: 5 Aug 2010 - 27 Feb 2011
Contact:
FRDC

Need

As the seafood sustainability debate in Australia moves forward, the dialog is increasingly not just between industry and government, but also with a range of marine conservation-focused NGOs. Industry needs positive dialog with these groups to build up trust and ultimately cooperation on sustainability issues.

Fishers have often been blamed for much that is wrong with the marine environment. However fishers understand that fishing and conservation are natural bedfellows as their livelihood depends on sustaining the ocean ecosystem and the resources within.

The seafood industry therefore needs to highlight the long-term benefit of balancing the need for conservation against the need for food and other services. In the UK there is a broad seafood industry perspective that fishers must be recognised as an essential part of building a sustainable future for the marine environment.

Phil, has been working in this field for the UK seafood industry for the past 20 years. Initially engaging with environmentalists when the rest of the industry thought it was 'crazy' to do so. He successfully managed to bridge the gap between conservationists, industry and government and for the last 10 years has run the UK's sustainable fishing advisory group, which brings together industry, conservationists and government membership.

It is felt that the seafood industry would greatly benefit and gain positive outcomes from the experience Phil has gained over the last 20 years. This is an opportunity to improve the communication, respect and cooperation between industry and conservationists that is so sorely needed.

Objectives

1. Disseminate to key industry and government stakeholders international advancements in water quality treatment technology as it relates to the prawn and barramundi farming industries.
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